Conservation of cofitness between ECD_03135 and ECD_02657 in Escherichia coli BL21

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03135 DUF494 family putative periplasmic protein 1.0 ECD_02657 23S rRNA C2498 2'-O-ribose methyltransferase, SAM-dependent 0.46 3
Escherichia coli BW25113 1.00 b3284 smg hypothetical protein (NCBI) 1.00 b2806 ygdE predicted methyltransferase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00419 Protein Smg 1.00 OHPLBJKB_00925 Ribosomal RNA large subunit methyltransferase M low > 73
Escherichia coli Nissle 1917 0.98 ECOLIN_RS18855 DUF494 family protein Smg 1.00 ECOLIN_RS15640 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 55
Escherichia coli ECRC102 0.98 NIAGMN_15310 smg DUF494 domain-containing protein 1.00 NIAGMN_17900 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM — —
Escherichia coli ECRC62 0.98 BNILDI_02180 smg DUF494 domain-containing protein 1.00 BNILDI_10515 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.55 20
Escherichia coli ECRC101 0.98 MCAODC_08070 smg DUF494 domain-containing protein 1.00 MCAODC_10655 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 87
Escherichia fergusonii Becca 0.98 EFB2_00539 Protein Smg 1.00 EFB2_01111 Ribosomal RNA large subunit methyltransferase M low > 86
Escherichia coli ECRC98 0.98 JDDGAC_21170 smg DUF494 domain-containing protein 1.00 JDDGAC_23795 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 86
Escherichia coli ECOR27 0.98 NOLOHH_09340 smg DUF494 domain-containing protein 1.00 NOLOHH_12010 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Escherichia coli ECRC99 0.98 KEDOAH_10600 smg DUF494 domain-containing protein 1.00 KEDOAH_08000 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM — —
Escherichia coli ECRC100 0.98 OKFHMN_17550 smg DUF494 domain-containing protein 1.00 OKFHMN_20130 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 80
Escherichia coli ECOR38 0.97 HEPCGN_16370 smg DUF494 domain-containing protein 1.00 HEPCGN_19385 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 87
Enterobacter asburiae PDN3 0.95 EX28DRAFT_0043 Uncharacterized protein conserved in bacteria 0.92 EX28DRAFT_2881 Predicted SAM-dependent methyltransferase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF2394 Protein of unknown function Smg 0.96 GFF4863 'LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM' transl_table=11 low > 78
Enterobacter sp. TBS_079 0.95 MPMX20_04192 Protein Smg 0.93 MPMX20_03669 Ribosomal RNA large subunit methyltransferase M low > 85
Klebsiella michiganensis M5al 0.93 BWI76_RS25660 hypothetical protein 0.93 BWI76_RS22945 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 92
Erwinia tracheiphila SCR3 0.86 LU632_RS22460 smg DUF494 family protein Smg 0.78 LU632_RS06265 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 74
Pantoea sp. MT58 0.85 IAI47_02300 DUF494 domain-containing protein 0.81 IAI47_04035 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 76
Serratia liquefaciens MT49 0.79 IAI46_23255 DUF494 domain-containing protein 0.79 IAI46_20330 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 86
Pectobacterium carotovorum WPP14 0.78 HER17_RS02235 DUF494 family protein 0.79 HER17_RS16405 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.43 66
Dickeya dianthicola 67-19 0.76 HGI48_RS19205 DUF494 domain-containing protein 0.78 HGI48_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 71
Dickeya dianthicola ME23 0.76 DZA65_RS20330 DUF494 domain-containing protein 0.78 DZA65_RS05400 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Rahnella sp. WP5 0.75 EX31_RS15965 DUF494 domain-containing protein 0.79 EX31_RS13100 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 89
Dickeya dadantii 3937 0.74 DDA3937_RS19115 DUF494 domain-containing protein 0.77 DDA3937_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 74
Alteromonas macleodii MIT1002 0.59 MIT1002_00023 hypothetical protein 0.40 MIT1002_01523 Ribosomal RNA large subunit methyltransferase M low > 70
Shewanella sp. ANA-3 0.59 Shewana3_0038 hypothetical protein (RefSeq) 0.59 Shewana3_2891 putative RNA 2'-O-ribose methyltransferase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.59 SO0035 smg smg protein (NCBI ptt file) 0.58 SO1536 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.59 Shew_3733 hypothetical protein (RefSeq) 0.57 Shew_2761 putative RNA 2'-O-ribose methyltransferase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.54 Sama_0046 hypothetical protein (RefSeq) 0.58 Sama_2426 putative RNA 2'-O-ribose methyltransferase (RefSeq) low > 62
Lysobacter sp. OAE881 0.40 ABIE51_RS02230 DUF494 family protein 0.37 ABIE51_RS05440 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 62
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.4747.1 Protein of unknown function Smg 0.37 Xcc-8004.4242.1 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM low > 74
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_0401 Uncharacterized protein conserved in bacteria 0.38 B158DRAFT_2158 Predicted SAM-dependent methyltransferase low > 40

Not shown: 6 genomes with orthologs for ECD_03135 only; 15 genomes with orthologs for ECD_02657 only