Conservation of cofitness between ECD_00078 and ECD_02519 in Escherichia coli BL21

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00078 global transcription factor 1.0 ECD_02519 gamma-aminobutyrate transporter 0.56 12
Escherichia coli BW25113 1.00 b0076 leuO probable transcriptional activator for leuABCD operon (VIMSS) 1.00 b2663 gabP gamma-aminobutyrate transporter (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03582 HTH-type transcriptional regulator LeuO 1.00 OHPLBJKB_01069 GABA permease low > 73
Escherichia coli ECRC62 1.00 BNILDI_08560 leuO transcriptional regulator LeuO 1.00 BNILDI_11290 gabP GABA permease low > 75
Escherichia coli ECRC98 0.99 JDDGAC_14300 leuO transcriptional regulator LeuO 1.00 JDDGAC_24565 gabP GABA permease low > 86
Escherichia coli ECOR27 0.99 NOLOHH_03050 leuO transcriptional regulator LeuO 1.00 NOLOHH_12730 gabP GABA permease low > 75
Escherichia coli ECRC102 0.99 NIAGMN_08555 leuO transcriptional regulator LeuO 1.00 NIAGMN_18670 gabP GABA permease
Escherichia coli ECRC101 0.99 MCAODC_01220 leuO transcriptional regulator LeuO 1.00 MCAODC_11425 gabP GABA permease low > 87
Escherichia coli Nissle 1917 0.99 ECOLIN_RS00410 transcriptional regulator LeuO 1.00 ECOLIN_RS14850 GABA permease
Escherichia coli ECRC100 0.99 OKFHMN_10705 leuO transcriptional regulator LeuO 1.00 OKFHMN_20905 gabP GABA permease low > 80
Escherichia coli ECRC99 0.99 KEDOAH_17450 leuO transcriptional regulator LeuO 1.00 KEDOAH_07235 gabP GABA permease
Escherichia fergusonii Becca 0.99 EFB2_03970 HTH-type transcriptional regulator LeuO 1.00 EFB2_01267 GABA permease low > 86
Escherichia coli ECOR38 0.99 HEPCGN_08685 leuO transcriptional regulator LeuO 1.00 HEPCGN_20160 gabP GABA permease low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF162 Probable transcriptional activator for leuABCD operon 0.92 GFF1568 gamma-aminobutyrate (GABA) permease low > 78
Pseudomonas putida KT2440 0.22 PP_2436 Transcriptional regulator, LysR family 0.68 PP_2911 gamma-aminobutyrate permease low > 96
Pseudomonas sp. RS175 0.22 PFR28_01264 PCP degradation transcriptional activation protein 0.62 PFR28_04595 GABA permease low > 88
Pseudomonas fluorescens FW300-N1B4 0.21 Pf1N1B4_3992 Transcriptional regulator, LysR family 0.62 Pf1N1B4_1639 transport permease protein of gamma-aminobutyrate low > 87
Pseudomonas syringae pv. syringae B728a 0.21 Psyr_2473 transcriptional regulator, LysR family 0.66 Psyr_4909 gamma-aminobutyrate:proton symporter, AAT family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.21 Psyr_2473 transcriptional regulator, LysR family 0.66 Psyr_4909 gamma-aminobutyrate:proton symporter, AAT family low > 86
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_2187 Transcriptional regulator, LysR family 0.62 Pf6N2E2_4195 transport permease protein of gamma-aminobutyrate low > 103
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_01560 LysR family transcriptional regulator 0.62 AO356_11625 GABA permease low > 104
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS18945 LysR family transcriptional regulator 0.65 PFLU_RS01545 GABA permease low > 109
Pseudomonas fluorescens SBW25 0.21 PFLU_RS18945 LysR family transcriptional regulator 0.65 PFLU_RS01545 GABA permease low > 109
Pseudomonas fluorescens FW300-N2E3 0.21 AO353_20375 LysR family transcriptional regulator 0.64 AO353_12005 GABA permease low > 101
Pseudomonas simiae WCS417 0.21 PS417_16995 LysR family transcriptional regulator 0.66 PS417_01505 gamma-aminobutyrate transporter low > 88
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_2596 Transcriptional regulator, LysR family 0.64 PfGW456L13_375 transport permease protein of gamma-aminobutyrate low > 87
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS30005 LysR family transcriptional regulator 0.41 RR42_RS33780 GABA permease low > 128
Paraburkholderia sabiae LMG 24235 0.19 QEN71_RS33090 LysR family transcriptional regulator 0.50 QEN71_RS31450 amino acid permease low > 153
Paraburkholderia bryophila 376MFSha3.1 0.19 H281DRAFT_03847 transcriptional regulator, LysR family 0.33 H281DRAFT_01668 gamma-aminobutyrate:proton symporter, AAT family 0.26 49
Burkholderia phytofirmans PsJN 0.18 BPHYT_RS30310 LysR family transcriptional regulator 0.42 BPHYT_RS21680 amino acid permease-associated protein
Pantoea sp. MT58 0.17 IAI47_19555 LysR family transcriptional regulator 0.61 IAI47_19470 GABA permease low > 76
Acinetobacter radioresistens SK82 0.15 MPMX26_02320 HTH-type transcriptional regulator SyrM 1 0.51 MPMX26_01988 GABA permease low > 36

Not shown: 39 genomes with orthologs for ECD_00078 only; 3 genomes with orthologs for ECD_02519 only