| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_04085 | | 2':3'-cyclic-nucleotide 2'-phosphodiesterase | 1.0 | ECD_02147 | | fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein | 0.64 | 16 |
| Escherichia coli BW25113 | 0.99 | b4213 | cpdB | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein (NCBI) | 1.00 | b2220 | atoC | fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.99 | HEPCGN_10240 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | HEPCGN_22430 | atoC | acetoacetate metabolism transcriptional regulator AtoC | low | > 85 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS24475 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | ECOLIN_RS12965 | | acetoacetate metabolism transcriptional regulator AtoC | — | — |
| Escherichia fergusonii Becca | 0.99 | EFB2_04315 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 1.00 | EFB2_01635 | | Regulatory protein AtoC | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.99 | OHPLBJKB_03820 | | '2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase' transl_table=11 | 1.00 | OHPLBJKB_01490 | | Regulatory protein AtoC | low | > 73 |
| Dinoroseobacter shibae DFL-12 | 0.42 | Dshi_2189 | | 5'-Nucleotidase domain protein (RefSeq) | 0.30 | Dshi_1196 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | low | > 64 |
| Agrobacterium fabrum C58 | 0.42 | Atu1210 | | putative 2,3-cyclic nucleotide 2-phosphodiesterase/3-nucleotidase | 0.35 | Atu3764 | | sigma 54 dependent transcriptional activator | low | > 89 |
| Rhizobium sp. OAE497 | 0.42 | ABIE40_RS08240 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.35 | ABIE40_RS16175 | | sigma-54 dependent transcriptional regulator | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.42 | SMc04449 | | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein | 0.35 | SMc04011 | | sigma-54-dependent transcription regulator protein | low | > 103 |
| Phaeobacter inhibens DSM 17395 | 0.41 | PGA1_c18140 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase CpdB | 0.31 | PGA1_c14810 | | nitrogen assimilation regulatory protein NtrX | — | — |
| Ralstonia solanacearum GMI1000 | 0.34 | RS_RS16850 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.39 | RS_RS25105 | | sigma-54-dependent Fis family transcriptional regulator | 0.42 | 79 |
| Ralstonia solanacearum PSI07 | 0.34 | RPSI07_RS08230 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.39 | RPSI07_RS07835 | | sigma-54-dependent Fis family transcriptional regulator | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.33 | RALBFv3_RS09040 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.39 | RALBFv3_RS23315 | | sigma-54-dependent Fis family transcriptional regulator | 0.45 | 74 |
| Ralstonia solanacearum UW163 | 0.33 | UW163_RS04555 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.39 | UW163_RS16565 | | sigma-54-dependent Fis family transcriptional regulator | — | — |
| Rhodanobacter sp. FW510-T8 | 0.33 | OKGIIK_13510 | ushA | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.36 | OKGIIK_01730 | atoC | sigma-54-dependent Fis family transcriptional regulator | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.32 | LRK54_RS10415 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.36 | LRK54_RS05020 | | sigma-54 dependent transcriptional regulator | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.32 | LRK55_RS10055 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.35 | LRK55_RS04800 | | sigma-54 dependent transcriptional regulator | low | > 63 |
| Dyella japonica UNC79MFTsu3.2 | 0.31 | ABZR86_RS16000 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.35 | ABZR86_RS11070 | | sigma-54 dependent transcriptional regulator | low | > 74 |
| Bacteroides ovatus ATCC 8483 | 0.14 | BACOVA_00529 | | 5'-nucleotidase, C-terminal domain protein | 0.38 | BACOVA_04264 | | Sigma-54 interaction domain protein | low | > 94 |
| Phocaeicola vulgatus CL09T03C04 | 0.13 | HMPREF1058_RS17715 | | bifunctional metallophosphatase/5'-nucleotidase | 0.36 | HMPREF1058_RS15800 | | sigma-54-dependent Fis family transcriptional regulator | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.12 | ABI39_RS13925 | | bifunctional metallophosphatase/5'-nucleotidase | 0.36 | ABI39_RS11790 | | sigma-54-dependent Fis family transcriptional regulator | low | > 72 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.12 | BT1236 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (NCBI ptt file) | 0.37 | BT1529 | | two-component system response regulator (NCBI ptt file) | low | > 81 |
| Bacteroides stercoris CC31F | 0.11 | HMPREF1181_RS04030 | | bifunctional metallophosphatase/5'-nucleotidase | 0.37 | HMPREF1181_RS03655 | | sigma-54-dependent Fis family transcriptional regulator | low | > 56 |
Not shown: 27 genomes with orthologs for ECD_04085 only; 25 genomes with orthologs for ECD_02147 only