Conservation of cofitness between ECD_01084 and ECD_02105 in Escherichia coli BL21

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_01084 DUF177 family protein 1.0 ECD_02105 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase 0.84 3
Escherichia coli ECRC101 1.00 MCAODC_22960 yceD 23S rRNA accumulation protein YceD 1.00 MCAODC_14450 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 87
Escherichia coli ECOR27 1.00 NOLOHH_21130 yceD 23S rRNA accumulation protein YceD 1.00 NOLOHH_14975 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 75
Escherichia coli ECRC102 1.00 NIAGMN_24230 yceD 23S rRNA accumulation protein YceD 1.00 NIAGMN_21165 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase — —
Escherichia coli ECRC99 1.00 KEDOAH_24155 yceD 23S rRNA accumulation protein YceD 1.00 KEDOAH_04785 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase — —
Escherichia coli ECOR38 1.00 HEPCGN_23880 yceD 23S rRNA accumulation protein YceD 1.00 HEPCGN_22665 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 87
Escherichia coli ECRC62 1.00 BNILDI_19290 yceD 23S rRNA accumulation protein YceD 1.00 BNILDI_13895 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 75
Escherichia fergusonii Becca 1.00 EFB2_02887 Large ribosomal RNA subunit accumulation protein YceD 1.00 EFB2_01681 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase low > 86
Escherichia coli ECRC98 1.00 JDDGAC_07260 yceD 23S rRNA accumulation protein YceD 1.00 JDDGAC_27360 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS06290 23S rRNA accumulation protein YceD 1.00 ECOLIN_RS12720 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 55
Escherichia coli BW25113 1.00 b1088 yceD hypothetical protein (NCBI) 1.00 b2175 spr predicted peptidase, outer membrane lipoprotein (NCBI) low > 76
Escherichia coli ECRC100 1.00 OKFHMN_03600 yceD 23S rRNA accumulation protein YceD 1.00 OKFHMN_23400 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_02578 Large ribosomal RNA subunit accumulation protein YceD 1.00 OHPLBJKB_01534 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.50 42
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF3370 COG1399 protein, clustered with ribosomal protein L32p 0.93 GFF3761 Lipoprotein spr precursor 0.73 19
Enterobacter asburiae PDN3 0.94 EX28DRAFT_1841 Predicted metal-binding, possibly nucleic acid-binding protein 0.93 EX28DRAFT_0386 Cell wall-associated hydrolases (invasion-associated proteins) low > 76
Enterobacter sp. TBS_079 0.94 MPMX20_01768 Large ribosomal RNA subunit accumulation protein YceD 0.94 MPMX20_03141 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase low > 85
Klebsiella michiganensis M5al 0.87 BWI76_RS11065 hypothetical protein 0.87 BWI76_RS19770 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase — —
Rahnella sp. WP5 0.85 EX31_RS24410 23S rRNA accumulation protein YceD 0.67 EX31_RS19120 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.74 56
Pectobacterium carotovorum WPP14 0.84 HER17_RS08625 23S rRNA accumulation protein YceD 0.73 HER17_RS12895 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 75
Erwinia tracheiphila SCR3 0.84 LU632_RS14845 yceD 23S rRNA accumulation protein YceD 0.74 LU632_RS17465 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 74
Dickeya dadantii 3937 0.84 DDA3937_RS13145 23S rRNA accumulation protein YceD 0.71 DDA3937_RS09195 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 74
Dickeya dianthicola ME23 0.83 DZA65_RS13680 23S rRNA accumulation protein YceD 0.71 DZA65_RS09540 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase — —
Dickeya dianthicola 67-19 0.82 HGI48_RS13210 23S rRNA accumulation protein YceD 0.71 HGI48_RS09235 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 71
Pantoea sp. MT58 0.79 IAI47_12095 23S rRNA accumulation protein YceD 0.68 IAI47_06625 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase — —
Serratia liquefaciens MT49 0.73 IAI46_09765 23S rRNA accumulation protein YceD 0.74 IAI46_17305 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase — —
Shewanella oneidensis MR-1 0.44 SO2781 conserved hypothetical protein (NCBI ptt file) 0.37 SO0061 lipoprotein, NLP/P60 family (NCBI ptt file) — —
Shewanella sp. ANA-3 0.44 Shewana3_2563 hypothetical protein (RefSeq) 0.37 Shewana3_0063 NLP/P60 protein (RefSeq) — —
Marinobacter adhaerens HP15 0.25 HP15_2217 protein containing DUF177 0.29 HP15_871 NLP/P60 family protein — —
Pseudomonas sp. RS175 0.22 PFR28_03014 Large ribosomal RNA subunit accumulation protein YceD 0.29 PFR28_03213 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase — —
Pseudomonas putida KT2440 0.19 PP_1910 conserved protein of unknown function 0.28 PP_1669 NLP/P60 family protein — —
Pseudomonas fluorescens SBW25 0.18 PFLU_RS23075 hypothetical protein 0.29 PFLU_RS22045 peptidase P60 low > 109
Pseudomonas fluorescens SBW25-INTG 0.18 PFLU_RS23075 hypothetical protein 0.29 PFLU_RS22045 peptidase P60 — —
Pseudomonas simiae WCS417 0.17 PS417_21460 metal-binding protein 0.28 PS417_20080 peptidase P60 — —
Pseudomonas fluorescens FW300-N2C3 0.16 AO356_20145 metal-binding protein 0.28 AO356_19115 peptidase P60 — —
Pseudomonas syringae pv. syringae B728a 0.16 Psyr_1643 Protein of unknown function DUF177 0.26 Psyr_3684 NLP/P60 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.16 Psyr_1643 Protein of unknown function DUF177 0.26 Psyr_3684 NLP/P60 — —

Not shown: 16 genomes with orthologs for ECD_01084 only; 6 genomes with orthologs for ECD_02105 only