Conservation of cofitness between CSW01_10815 and CSW01_19380 in Vibrio cholerae E7946 ATCC 55056

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10815 Cys-tRNA(Pro) deacylase 1.0 CSW01_19380 LysR family transcriptional regulator 0.43 19
Escherichia fergusonii Becca 0.56 EFB2_03577 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 EFB2_03835 HTH-type transcriptional regulator DmlR low > 86
Escherichia coli Nissle 1917 0.56 ECOLIN_RS02850 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 ECOLIN_RS01140 DNA-binding transcriptional regulator YafC — —
Escherichia coli ECOR38 0.55 HEPCGN_06725 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 HEPCGN_07680 lysR LysR family transcriptional regulator low > 88
Escherichia coli BW25113 0.55 b0481 ybaK hypothetical protein (NCBI) 0.23 b0208 yafC predicted DNA-binding transcriptional regulator (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03193 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 OHPLBJKB_03453 HTH-type transcriptional regulator DmlR low > 74
Pantoea agglomerans CFBP13505 P0401 0.55 PagCFBP13505_RS10790 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.27 PagCFBP13505_RS20745 LysR family transcriptional regulator low > 74
Rahnella sp. WP5 0.55 EX31_RS22565 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.28 EX31_RS04005 LysR family transcriptional regulator low > 89
Escherichia coli ECOR27 0.55 NOLOHH_01035 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 NOLOHH_02345 yafC DNA-binding transcriptional regulator YafC low > 76
Serratia liquefaciens MT49 0.55 IAI46_05300 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.28 IAI46_12425 LysR family transcriptional regulator low > 87
Escherichia coli ECRC99 0.55 KEDOAH_19865 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 KEDOAH_18155 yafC DNA-binding transcriptional regulator YafC — —
Escherichia coli ECRC101 0.55 MCAODC_27325 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 MCAODC_00515 yafC DNA-binding transcriptional regulator YafC low > 87
Escherichia coli ECRC100 0.55 OKFHMN_08105 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 OKFHMN_10000 yafC DNA-binding transcriptional regulator YafC low > 79
Escherichia coli ECRC98 0.55 JDDGAC_11750 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 JDDGAC_13595 yafC DNA-binding transcriptional regulator YafC low > 87
Escherichia coli ECRC102 0.55 NIAGMN_06155 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.23 NIAGMN_07850 yafC DNA-binding transcriptional regulator YafC low > 80
Pantoea sp. MT58 0.54 IAI47_14410 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.28 IAI47_01190 LysR family transcriptional regulator low > 76
Erwinia amylovora T8 0.54 OLJFJH_17720 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.26 OLJFJH_01560 LysR family transcriptional regulator low > 58
Enterobacter sp. TBS_079 0.54 MPMX20_01082 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.26 MPMX20_00697 HTH-type transcriptional regulator PgrR low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF4401 Cys-tRNA(Pro) deacylase YbaK 0.24 GFF4039 LysR family transcriptional regulator YafC low > 78
Pseudomonas sp. BP01 0.53 JOY50_RS14880 ybaK Cys-tRNA(Pro) deacylase 0.29 JOY50_RS23715 LysR substrate-binding domain-containing protein low > 84
Enterobacter asburiae PDN3 0.53 EX28DRAFT_2477 Cys-tRNA(Pro) deacylase 0.26 EX28DRAFT_3600 Transcriptional regulator low > 76
Pseudomonas putida KT2440 0.53 PP_1077 Cys-tRNAPro deacylase 0.29 PP_1615 Transcriptional regulator, LysR family low > 96
Pseudomonas aeruginosa PUPa3 0.52 DQ20_RS42050 ybaK;go_function=aminoacyl-tRNA Cys-tRNA(Pro) deacylase 0.29 DQ20_RS42300 gfnR;inference=COORDINATES glutathione-dependent formaldehyde neutralization regulator low > 101
Pseudomonas aeruginosa PA14 0.52 IKLFDK_18280 Cys-tRNA(Pro) deacylase 0.29 IKLFDK_18535 glutathione-dependent formaldehyde neutralization regulator low > 98
Pseudomonas aeruginosa MRSN321 0.52 DY961_RS15090 ybaK;go_function=aminoacyl-tRNA Cys-tRNA(Pro) deacylase 0.29 DY961_RS14825 gfnR;inference=COORDINATES glutathione-dependent formaldehyde neutralization regulator low > 100
Pseudomonas sp. SVBP6 0.51 COO64_RS16810 ybaK Cys-tRNA(Pro) deacylase 0.29 COO64_RS19755 LysR substrate-binding domain-containing protein low > 93
Dickeya dadantii 3937 0.50 DDA3937_RS05835 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.26 DDA3937_RS18470 LysR family transcriptional regulator low > 74
Shewanella sp. ANA-3 0.50 Shewana3_0957 ybaK/ebsC protein (RefSeq) 0.28 Shewana3_1836 LysR family transcriptional regulator (RefSeq) low > 73
Shewanella oneidensis MR-1 0.50 SO1124 conserved hypothetical protein TIGR00011 (NCBI ptt file) 0.29 SOA0165 transcriptional regulator, LysR family (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.49 MIT1002_01641 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.27 MIT1002_03088 D-malate degradation protein R low > 70
Shewanella amazonensis SB2B 0.49 Sama_0531 YbaK/EbsC protein (RefSeq) 0.29 Sama_0005 LysR, substrate-binding (RefSeq) low > 62
Pseudomonas segetis P6 0.45 MPMX49_01431 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.30 MPMX49_04464 HTH-type transcriptional regulator DmlR low > 75
Shewanella loihica PV-4 0.42 Shew_0016 ybaK/ebsC protein (RefSeq) 0.28 Shew_3105 LysR family transcriptional regulator (RefSeq) — —
Variovorax sp. OAS795 0.26 ABID97_RS21705 aminoacyl-tRNA deacylase 0.27 ABID97_RS00735 LysR family transcriptional regulator low > 91
Paraburkholderia sabiae LMG 24235 0.24 QEN71_RS02765 Cys-tRNA(Pro) deacylase 0.29 QEN71_RS14890 LysR family transcriptional regulator low > 153
Variovorax sp. SCN45 0.24 GFF3103 Cys-tRNA(Pro) deacylase YbaK 0.28 GFF3618 Transcriptional regulator, LysR family low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.23 GFF288 Transcriptional regulator 0.27 GFF1938 Transcriptional regulator, LysR family — —

Not shown: 61 genomes with orthologs for CSW01_10815 only; 1 genomes with orthologs for CSW01_19380 only