Conservation of cofitness between CSW01_01710 and CSW01_18780 in Vibrio cholerae E7946 ATCC 55056

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01710 Rsd/AlgQ family anti-sigma factor 1.0 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.62 4
Shewanella oneidensis MR-1 0.39 SO0433 rsd regulator of sigma D (NCBI ptt file) 0.60 SO0980 RNA methyltransferase, TrmA family (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.38 Shewana3_0434 anti-RNA polymerase sigma 70 factor (RefSeq) 0.59 Shewana3_3309 rumB 23S rRNA methyluridine methyltransferase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.37 Sama_0386 anti-RNA polymerase sigma 70 factor (RefSeq) 0.59 Sama_0630 rumB 23S rRNA methyluridine methyltransferase (RefSeq) low > 62
Shewanella loihica PV-4 0.36 Shew_3423 anti-RNA polymerase sigma 70 factor (RefSeq) 0.57 Shew_0801 rumB 23S rRNA methyluridine methyltransferase (RefSeq) low > 60
Serratia liquefaciens MT49 0.32 IAI46_01325 Rsd/AlgQ family anti-sigma factor 0.54 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 87
Pantoea agglomerans CFBP13505 P0401 0.31 PagCFBP13505_RS22615 Rsd/AlgQ family anti-sigma factor 0.54 PagCFBP13505_RS04310 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 74
Pantoea sp. MT58 0.31 IAI47_18080 Rsd/AlgQ family anti-sigma factor 0.55 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF4197 Regulator of sigma D 0.51 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) low > 78
Escherichia coli ECOR27 0.29 NOLOHH_05515 rsd sigma D regulator 0.55 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_04055 Regulator of sigma D 0.55 OHPLBJKB_02809 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 74
Escherichia coli ECRC98 0.29 JDDGAC_16995 rsd sigma D regulator 0.54 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 87
Escherichia coli ECRC101 0.29 MCAODC_03870 rsd sigma D regulator 0.55 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 87
Escherichia coli ECRC102 0.29 NIAGMN_11120 rsd sigma D regulator 0.55 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 80
Escherichia coli BL21 0.29 ECD_03872 stationary phase protein, binds sigma 70 RNA polymerase subunit 0.54 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent low > 61
Escherichia coli ECOR38 0.29 HEPCGN_12005 rsd sigma D regulator 0.55 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 88
Escherichia coli ECRC100 0.29 OKFHMN_13370 rsd sigma D regulator 0.55 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.81 1
Escherichia coli BW25113 0.29 b3995 rsd stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) 0.54 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) low > 76
Escherichia coli ECRC99 0.29 KEDOAH_14790 rsd sigma D regulator 0.55 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC — —
Escherichia coli ECRC62 0.29 BNILDI_06010 rsd sigma D regulator 0.54 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 75
Enterobacter sp. TBS_079 0.29 MPMX20_00218 Regulator of sigma D 0.53 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 85
Klebsiella pneumoniae MKP103 0.29 KDGMDA_10045 sigma D regulator 0.53 KDGMDA_17730 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 95
Escherichia fergusonii Becca 0.29 EFB2_04616 Regulator of sigma D 0.55 EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 86
Escherichia coli Nissle 1917 0.29 ECOLIN_RS23045 sigma D regulator 0.55 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 55
Rahnella sp. WP5 0.29 EX31_RS16820 Rsd/AlgQ family anti-sigma factor 0.51 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 89
Klebsiella michiganensis M5al 0.28 BWI76_RS01560 Rsd/AlgQ family anti-sigma factor 0.52 BWI76_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase low > 92
Enterobacter asburiae PDN3 0.27 EX28DRAFT_4537 Regulator of sigma D 0.53 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB low > 76
Pectobacterium carotovorum WPP14 0.27 HER17_RS20375 Rsd/AlgQ family anti-sigma factor 0.52 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 75
Erwinia tracheiphila HP pepo 2.2 0.25 IJEDHG_10890 rsd sigma D regulator 0.54 IJEDHG_20140 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 61
Erwinia tracheiphila SCR3 0.25 LU632_RS00975 Rsd/AlgQ family anti-sigma factor 0.54 LU632_RS09660 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 73
Dickeya dianthicola ME23 0.21 DZA65_RS01220 Rsd/AlgQ family anti-sigma factor 0.52 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 75
Dickeya dianthicola 67-19 0.20 HGI48_RS01175 sigma D regulator 0.52 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 71
Dickeya dadantii 3937 0.20 DDA3937_RS01180 Rsd/AlgQ family anti-sigma factor 0.53 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 74

Not shown: 26 genomes with orthologs for CSW01_01710 only; 2 genomes with orthologs for CSW01_18780 only