Conservation of cofitness between CSW01_06735 and CSW01_16835 in Vibrio cholerae E7946 ATCC 55056

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06735 methylisocitrate lyase 1.0 CSW01_16835 catabolite repressor/activator 0.86 15
Pseudomonas aeruginosa PUPa3 0.65 DQ20_RS44335 prpB;go_function=methylisocitrate methylisocitrate lyase 0.44 DQ20_RS41950 cra;go_function=DNA catabolite repressor/activator 0.29 82
Pseudomonas aeruginosa MRSN321 0.65 DY961_RS08515 prpB;go_function=methylisocitrate methylisocitrate lyase 0.44 DY961_RS15195 cra;go_function=DNA catabolite repressor/activator 0.30 100
Pseudomonas aeruginosa PA14 0.65 IKLFDK_03445 methylisocitrate lyase 0.44 IKLFDK_18185 catabolite repressor/activator low > 98
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_00900 2-methylisocitrate lyase 0.45 AO353_05490 transcriptional regulator low > 101
Pseudomonas sp. RS175 0.64 PFR28_02928 2-methylisocitrate lyase 0.45 PFR28_00104 Catabolite repressor/activator low > 88
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_20865 2-methylisocitrate lyase 0.45 AO356_07340 transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N1B4 0.63 Pf1N1B4_3819 Methylisocitrate lyase (EC 4.1.3.30) 0.45 Pf1N1B4_1147 Fructose repressor FruR, LacI family low > 87
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_6061 Methylisocitrate lyase (EC 4.1.3.30) (from data) 0.45 Pf6N2E2_3340 Fructose repressor FruR, LacI family low > 103
Pseudomonas sp. DMC3 0.63 GFF5230 2-methylisocitrate lyase 0.44 GFF5002 Catabolite repressor/activator 0.55 53
Pseudomonas putida KT2440 0.63 PP_2334 2-methylisocitrate lyase 0.41 PP_0792 catabolite repressor-activator, DNA-binding transcriptional dual regulator low > 96
Pseudomonas simiae WCS417 0.63 PS417_21080 2-methylisocitrate lyase 0.43 PS417_03960 transcriptional regulator — —
Pseudomonas sp. SVBP6 0.63 COO64_RS09900 prpB methylisocitrate lyase 0.45 COO64_RS11270 cra catabolite repressor/activator low > 93
Pseudomonas stutzeri RCH2 0.63 Psest_2321 methylisocitrate lyase 0.45 Psest_3356 D-fructose-responsive transcription factor low > 67
Pseudomonas sp. BP01 0.63 JOY50_RS25750 prpB methylisocitrate lyase 0.41 JOY50_RS19320 cra catabolite repressor/activator low > 84
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_4118 Methylisocitrate lyase (EC 4.1.3.30) 0.42 PfGW456L13_5077 Fructose repressor FruR, LacI family low > 87
Pseudomonas orientalis W4I3 0.63 QF045_RS22905 methylisocitrate lyase 0.43 QF045_RS06935 catabolite repressor/activator low > 93
Pseudomonas lactucae CFBP13502 0.62 GEMAOFIL_04361 2-methylisocitrate lyase 0.39 GEMAOFIL_00996 Catabolite repressor/activator low > 96
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS22690 methylisocitrate lyase 0.43 PFLU_RS04005 catabolite repressor/activator low > 109
Pseudomonas fluorescens SBW25 0.62 PFLU_RS22690 methylisocitrate lyase 0.43 PFLU_RS04005 catabolite repressor/activator low > 109
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_2085 methylisocitrate lyase 0.46 Psyr_0820 transcriptional regulator, LacI family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_2085 methylisocitrate lyase 0.46 Psyr_0820 transcriptional regulator, LacI family low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_03339 2-methylisocitrate lyase 0.42 OHPLBJKB_03579 Catabolite repressor/activator low > 74
Escherichia fergusonii Becca 0.62 EFB2_03706 2-methylisocitrate lyase 0.42 EFB2_03967 Catabolite repressor/activator low > 86
Escherichia coli BW25113 0.62 b0331 prpB 2-methylisocitrate lyase (NCBI) 0.42 b0080 fruR DNA-binding transcriptional dual regulator (NCBI) low > 76
Escherichia coli BL21 0.62 ECD_00286 2-methylisocitrate lyase 0.42 ECD_00081 transcriptional repressor-activator for carbon metabolism low > 61
Escherichia coli ECOR38 0.62 HEPCGN_07485 prpB methylisocitrate lyase 0.41 HEPCGN_08665 cra catabolite repressor/activator low > 88
Escherichia coli ECRC62 0.62 BNILDI_23190 prpB methylisocitrate lyase 0.41 BNILDI_08580 cra catabolite repressor/activator low > 75
Escherichia coli ECOR27 0.62 NOLOHH_01775 prpB methylisocitrate lyase 0.41 NOLOHH_03030 cra catabolite repressor/activator low > 76
Escherichia coli Nissle 1917 0.61 ECOLIN_RS02150 methylisocitrate lyase 0.42 ECOLIN_RS00430 catabolite repressor/activator low > 55
Escherichia coli ECRC98 0.61 JDDGAC_12555 prpB methylisocitrate lyase 0.41 JDDGAC_14280 cra catabolite repressor/activator low > 87
Escherichia coli ECRC101 0.61 MCAODC_28130 prpB methylisocitrate lyase 0.41 MCAODC_01200 cra catabolite repressor/activator low > 87
Escherichia coli ECRC100 0.61 OKFHMN_08900 prpB methylisocitrate lyase 0.41 OKFHMN_10685 cra catabolite repressor/activator low > 79
Escherichia coli ECRC99 0.61 KEDOAH_19065 prpB methylisocitrate lyase 0.41 KEDOAH_17470 cra catabolite repressor/activator — —
Escherichia coli ECRC102 0.61 NIAGMN_06955 prpB methylisocitrate lyase 0.41 NIAGMN_08535 cra catabolite repressor/activator low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4263 Methylisocitrate lyase (EC 4.1.3.30) 0.41 GFF158 Fructose repressor FruR, LacI family low > 78
Dickeya dianthicola 67-19 0.14 HGI48_RS06990 phosphoenolpyruvate mutase 0.42 HGI48_RS18030 catabolite repressor/activator low > 71
Dickeya dianthicola ME23 0.14 DZA65_RS07470 phosphoenolpyruvate mutase 0.42 DZA65_RS19175 catabolite repressor/activator low > 75

Not shown: 38 genomes with orthologs for CSW01_06735 only; 14 genomes with orthologs for CSW01_16835 only