Conservation of cofitness between CSW01_12480 and CSW01_13985 in Vibrio cholerae E7946 ATCC 55056

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12480 sigma-E factor negative regulatory protein RseA 1.0 CSW01_13985 Bcr/CflA family drug resistance efflux transporter 0.45 18
Erwinia amylovora T8 0.36 OLJFJH_10220 anti-sigma-E factor RseA 0.35 OLJFJH_14520 purine nucleoside transporter PunC low > 58
Klebsiella pneumoniae MKP103 0.36 KDGMDA_28475 anti-sigma-E factor RseA 0.35 KDGMDA_23480 purine nucleoside transporter PunC low > 95
Klebsiella michiganensis M5al 0.35 BWI76_RS21350 anti-RNA polymerase sigma factor SigE 0.34 BWI76_RS16520 Bcr/CflA family multidrug efflux MFS transporter low > 92
Escherichia coli ECRC98 0.35 JDDGAC_25045 rseA anti-sigma-E factor RseA 0.37 JDDGAC_01965 punC purine nucleoside transporter PunC low > 87
Escherichia coli ECRC101 0.35 MCAODC_11910 rseA anti-sigma-E factor RseA 0.37 MCAODC_18035 punC purine nucleoside transporter PunC low > 87
Escherichia coli ECRC102 0.35 NIAGMN_19150 rseA anti-sigma-E factor RseA 0.37 NIAGMN_00690 punC purine nucleoside transporter PunC low > 80
Escherichia coli ECRC100 0.35 OKFHMN_21380 rseA anti-sigma-E factor RseA 0.37 OKFHMN_27375 punC purine nucleoside transporter PunC — —
Escherichia coli ECRC99 0.35 KEDOAH_06840 rseA anti-sigma-E factor RseA 0.37 KEDOAH_00735 punC purine nucleoside transporter PunC — —
Pantoea sp. MT58 0.35 IAI47_04855 anti-sigma-E factor RseA 0.37 IAI47_10805 Bcr/CflA family multidrug efflux MFS transporter low > 76
Pantoea agglomerans CFBP13505 P0401 0.35 PagCFBP13505_RS14745 anti-sigma-E factor RseA 0.37 PagCFBP13505_RS17785 Bcr/CflA family multidrug efflux MFS transporter — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF2108 Sigma factor RpoE negative regulatory protein RseA 0.35 GFF3616 Putative transport protein — —
Rahnella sp. WP5 0.33 EX31_RS21805 anti-sigma-E factor RseA 0.37 EX31_RS13840 Bcr/CflA family multidrug efflux MFS transporter low > 89
Enterobacter asburiae PDN3 0.33 EX28DRAFT_0073 Negative regulator of sigma E activity 0.36 EX28DRAFT_1657 drug resistance transporter, Bcr/CflA subfamily low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.33 OHPLBJKB_01135 Anti-sigma-E factor RseA 0.37 OHPLBJKB_02064 Inner membrane transport protein YdhC low > 74
Escherichia coli ECOR27 0.32 NOLOHH_13055 rseA anti-sigma-E factor RseA 0.37 NOLOHH_17895 punC purine nucleoside transporter PunC low > 76
Escherichia coli ECOR38 0.32 HEPCGN_20525 rseA anti-sigma-E factor RseA 0.37 HEPCGN_05760 punC purine nucleoside transporter PunC 0.51 73
Escherichia fergusonii Becca 0.32 EFB2_01324 Anti-sigma-E factor RseA 0.37 EFB2_02332 Inner membrane transport protein YdhC low > 86
Escherichia coli ECRC62 0.32 BNILDI_11855 rseA anti-sigma-E factor RseA 0.37 BNILDI_16685 punC purine nucleoside transporter PunC low > 75
Escherichia coli BL21 0.32 ECD_02466 anti-sigma factor 0.37 ECD_01631 putative arabinose efflux transporter — —
Escherichia coli BW25113 0.32 b2572 rseA anti-sigma factor (NCBI) 0.37 b1660 ydhC predicted transporter (NCBI) low > 76
Escherichia coli Nissle 1917 0.32 ECOLIN_RS14555 anti-sigma-E factor RseA 0.37 ECOLIN_RS09255 purine nucleoside transporter PunC low > 55
Erwinia tracheiphila SCR3 0.32 LU632_RS15420 rseA anti-sigma-E factor RseA 0.35 LU632_RS11180 Bcr/CflA family multidrug efflux MFS transporter — —
Enterobacter sp. TBS_079 0.32 MPMX20_03443 Anti-sigma-E factor RseA 0.37 MPMX20_01976 Inner membrane transport protein YdhC low > 85
Erwinia tracheiphila HP pepo 2.2 0.31 IJEDHG_01230 rseA anti-sigma-E factor RseA 0.35 IJEDHG_25175 punC purine nucleoside transporter PunC — —
Serratia liquefaciens MT49 0.29 IAI46_19580 anti-sigma-E factor RseA 0.35 IAI46_11230 Bcr/CflA family multidrug efflux MFS transporter low > 87
Shewanella oneidensis MR-1 0.27 SO1343 rseA sigma-E factor negative regulatory protein (NCBI ptt file) 0.40 SO2373 drug resistance transporter, Bcr/CflA family protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.27 Shewana3_3031 anti sigma-E protein, RseA (RefSeq) 0.42 Shewana3_2062 inner membrane transport protein YdhC (RefSeq) — —
Shewanella loihica PV-4 0.26 Shew_1049 anti sigma-E protein, RseA (RefSeq) 0.36 Shew_2012 inner membrane transport protein YdhC (RefSeq) — —
Shewanella amazonensis SB2B 0.22 Sama_0875 sigma-E factor negative regulatory protein (RefSeq) 0.36 Sama_1784 inner membrane transport protein YdhC (RefSeq) low > 62

Not shown: 5 genomes with orthologs for CSW01_12480 only; 5 genomes with orthologs for CSW01_13985 only