Conservation of cofitness between CSW01_02100 and CSW01_13285 in Vibrio cholerae E7946 ATCC 55056

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02100 RNase E specificity factor CsrD 1.0 CSW01_13285 ribulose-phosphate 3-epimerase 0.81 2
Serratia liquefaciens MT49 0.29 IAI46_22725 RNase E specificity factor CsrD 0.76 IAI46_23685 ribulose-phosphate 3-epimerase low > 87
Dickeya dianthicola ME23 0.26 DZA65_RS01405 RNase E specificity factor CsrD 0.76 DZA65_RS20745 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola 67-19 0.26 HGI48_RS01345 RNase E specificity factor CsrD 0.76 HGI48_RS19660 ribulose-phosphate 3-epimerase — —
Rahnella sp. WP5 0.26 EX31_RS12230 RNase E specificity factor CsrD 0.74 EX31_RS04705 ribulose-phosphate 3-epimerase — —
Enterobacter asburiae PDN3 0.26 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain 0.78 EX28DRAFT_4156 ribulose-phosphate 3-epimerase low > 76
Escherichia coli ECOR38 0.25 HEPCGN_16585 csrD RNase E specificity factor CsrD 0.77 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase low > 88
Dickeya dadantii 3937 0.25 DDA3937_RS01425 RNase E specificity factor CsrD 0.75 DDA3937_RS19530 ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC98 0.25 JDDGAC_21345 csrD RNase E specificity factor CsrD 0.77 JDDGAC_20760 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC100 0.25 OKFHMN_17720 csrD RNase E specificity factor CsrD 0.77 OKFHMN_17130 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECOR27 0.25 NOLOHH_09505 csrD RNase E specificity factor CsrD 0.77 NOLOHH_08920 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC102 0.25 NIAGMN_15480 csrD RNase E specificity factor CsrD 0.77 NIAGMN_14900 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC101 0.25 MCAODC_08240 csrD RNase E specificity factor CsrD 0.77 MCAODC_07660 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC99 0.25 KEDOAH_10430 csrD RNase E specificity factor CsrD 0.77 KEDOAH_11010 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC62 0.25 BNILDI_02015 csrD RNase E specificity factor CsrD 0.77 BNILDI_02600 dam adenine-specific DNA-methyltransferase — —
Escherichia coli Nissle 1917 0.25 ECOLIN_RS18635 RNase E specificity factor CsrD 0.77 ECOLIN_RS19345 ribulose-phosphate 3-epimerase low > 55
Escherichia fergusonii Becca 0.25 EFB2_00579 RNase E specificity factor CsrD 0.77 EFB2_00442 Ribulose-phosphate 3-epimerase — —
Escherichia coli BW25113 0.25 b3252 yhdA conserved inner membrane protein (NCBI) 0.77 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.25 OHPLBJKB_00453 RNase E specificity factor CsrD 0.77 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase — —
Escherichia coli BL21 0.25 ECD_03111 targeting factor for csrBC sRNA degradation 0.77 ECD_03238 D-ribulose-5-phosphate 3-epimerase low > 61
Enterobacter sp. TBS_079 0.25 MPMX20_04158 RNase E specificity factor CsrD 0.77 MPMX20_04275 Ribulose-phosphate 3-epimerase low > 85
Pectobacterium carotovorum WPP14 0.25 HER17_RS20175 RNase E specificity factor CsrD 0.76 HER17_RS01795 ribulose-phosphate 3-epimerase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF2133 RNase E specificity factor CsrD 0.76 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 78
Klebsiella michiganensis M5al 0.24 BWI76_RS25505 RNase E specificity factor CsrD 0.77 BWI76_RS26070 ribulose-phosphate 3-epimerase — —
Erwinia tracheiphila SCR3 0.24 LU632_RS21455 csrD RNase E specificity factor CsrD 0.76 LU632_RS22850 rpe ribulose-phosphate 3-epimerase — —
Erwinia tracheiphila HP pepo 2.2 0.24 IJEDHG_13555 csrD RNase E specificity factor CsrD 0.76 IJEDHG_12050 rpe ribulose-phosphate 3-epimerase — —
Klebsiella pneumoniae MKP103 0.23 KDGMDA_06280 Lipoprotein 0.78 KDGMDA_06895 ribulose-phosphate 3-epimerase — —
Erwinia amylovora T8 0.22 OLJFJH_06905 RNase E specificity factor CsrD 0.76 OLJFJH_04075 ribulose-phosphate 3-epimerase — —
Shewanella oneidensis MR-1 0.22 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) 0.78 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) — —
Pantoea sp. MT58 0.22 IAI47_02430 RNase E specificity factor CsrD 0.76 IAI47_01910 ribulose-phosphate 3-epimerase — —
Pantoea agglomerans CFBP13505 P0401 0.22 PagCFBP13505_RS11025 RNase E specificity factor CsrD 0.76 PagCFBP13505_RS21685 ribulose-phosphate 3-epimerase — —
Shewanella sp. ANA-3 0.21 Shewana3_3668 regulatory protein CsrD (RefSeq) 0.78 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) — —
Shewanella amazonensis SB2B 0.21 Sama_0449 regulatory protein CsrD (RefSeq) 0.77 Sama_3362 ribulose-phosphate 3-epimerase (RefSeq) — —
Shewanella loihica PV-4 0.19 Shew_0384 regulatory protein CsrD (RefSeq) 0.77 Shew_0219 ribulose-phosphate 3-epimerase (RefSeq) — —

Not shown: 0 genomes with orthologs for CSW01_02100 only; 89 genomes with orthologs for CSW01_13285 only