Conservation of cofitness between CSW01_00370 and CSW01_12415 in Vibrio cholerae E7946 ATCC 55056

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00370 LysR family transcriptional regulator 1.0 CSW01_12415 two-component sensor histidine kinase BarA 0.48 4
Shewanella loihica PV-4 0.44 Shew_3589 LysR family transcriptional regulator (RefSeq) 0.40 Shew_1200 hybrid sensory histidine kinase BarA (RefSeq) low > 60
Shewanella sp. ANA-3 0.42 Shewana3_3949 LysR family transcriptional regulator (RefSeq) 0.41 Shewana3_1109 hybrid sensory histidine kinase BarA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.42 SO4556 transcriptional regulator, LysR family (NCBI ptt file) 0.40 SO_3457 hybrid sensory histidine kinase BarA (RefSeq) low > 76
Shewanella amazonensis SB2B 0.41 Sama_3449 regulatory protein, LysR (RefSeq) 0.39 Sama_1031 hybrid sensory histidine kinase BarA (RefSeq) low > 62
Pseudomonas sp. SVBP6 0.23 COO64_RS24425 LysR family transcriptional regulator 0.27 COO64_RS07350 response regulator low > 93
Escherichia coli BW25113 0.23 b3711 yidZ predicted DNA-binding transcriptional regulator (NCBI) 0.48 b2786 barA hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI) 0.21 2
Escherichia fergusonii Becca 0.22 EFB2_04921 HTH-type transcriptional regulator YidZ 0.48 EFB2_01131 Signal transduction histidine-protein kinase BarA 0.51 38
Escherichia coli ECOR38 0.22 HEPCGN_13655 yidZ HTH-type transcriptional regulator YidZ 0.48 HEPCGN_19490 barA two-component sensor histidine kinase BarA low > 88
Escherichia coli BL21 0.22 ECD_03595 putative DNA-binding transcriptional regulator 0.48 ECD_02631 hybrid sensory histidine kinase, in two-component regulatory system with UvrY low > 61
Escherichia coli Nissle 1917 0.22 ECOLIN_RS21370 HTH-type transcriptional regulator YidZ 0.48 ECOLIN_RS15525 two-component sensor histidine kinase BarA low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.22 OHPLBJKB_04342 HTH-type transcriptional regulator YidZ 0.48 OHPLBJKB_00945 Signal transduction histidine-protein kinase BarA low > 74
Escherichia coli ECRC98 0.22 JDDGAC_18570 yidZ HTH-type transcriptional regulator YidZ 0.48 JDDGAC_23905 barA two-component sensor histidine kinase BarA low > 87
Escherichia coli ECRC99 0.22 KEDOAH_13200 yidZ HTH-type transcriptional regulator YidZ 0.48 KEDOAH_07890 barA two-component sensor histidine kinase BarA — —
Escherichia coli ECRC101 0.22 MCAODC_05460 yidZ HTH-type transcriptional regulator YidZ 0.48 MCAODC_10765 barA two-component sensor histidine kinase BarA low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.22 GFF1743 Putative LysR-family transcriptional regulator YidZ 0.47 GFF4839 BarA sensory histidine kinase (= VarS = GacS) low > 78
Escherichia coli ECRC62 0.22 BNILDI_04430 yidZ HTH-type transcriptional regulator YidZ 0.48 BNILDI_10620 barA two-component sensor histidine kinase BarA low > 75
Pseudomonas sp. RS175 0.22 PFR28_03920 Nodulation protein D 2 0.27 PFR28_03227 Signal transduction histidine-protein kinase BarA low > 88
Escherichia coli ECRC100 0.22 OKFHMN_14950 yidZ HTH-type transcriptional regulator YidZ 0.48 OKFHMN_20240 barA two-component sensor histidine kinase BarA low > 79
Escherichia coli ECOR27 0.22 NOLOHH_07100 yidZ HTH-type transcriptional regulator YidZ 0.48 NOLOHH_12115 barA two-component sensor histidine kinase BarA low > 76
Escherichia coli ECRC102 0.22 NIAGMN_12705 yidZ HTH-type transcriptional regulator YidZ 0.48 NIAGMN_18010 barA two-component sensor histidine kinase BarA low > 80
Enterobacter sp. TBS_079 0.22 MPMX20_04648 HTH-type transcriptional regulator YidZ 0.48 MPMX20_03655 Signal transduction histidine-protein kinase BarA low > 85
Enterobacter asburiae PDN3 0.22 EX28DRAFT_3995 Transcriptional regulator 0.48 EX28DRAFT_2866 Uncharacterized domain of BarA-like signal transduction histidine kinases 0.53 21
Klebsiella pneumoniae MKP103 0.22 KDGMDA_08715 HTH-type transcriptional regulator YidZ 0.48 KDGMDA_03345 two-component sensor histidine kinase BarA low > 95
Pseudomonas aeruginosa PA14 0.22 IKLFDK_27530 LysR family transcriptional regulator 0.27 IKLFDK_04170 two-component system sensor histidine kinase GacS low > 100
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_1236 Transcriptional regulator, LysR family 0.28 Pf6N2E2_5720 BarA sensory histidine kinase (= VarS = GacS) low > 103
Pseudomonas lactucae CFBP13502 0.21 GEMAOFIL_02815 Nodulation protein D 2 0.28 GEMAOFIL_03601 Signal transduction histidine-protein kinase BarA low > 93
Pseudomonas sp. DMC3 0.21 GFF2774 PCP degradation transcriptional activation protein 0.27 GFF4823 Signal transduction histidine-protein kinase BarA low > 89
Rahnella sp. WP5 0.21 EX31_RS00910 LysR family transcriptional regulator 0.47 EX31_RS07965 two-component sensor histidine kinase BarA low > 89
Pseudomonas sp. S08-1 0.20 OH686_17940 Transcriptional regulator, LysR family 0.27 OH686_18945 Signal transduction histidine-protein kinase BarA low > 80
Klebsiella michiganensis M5al 0.19 BWI76_RS00095 DNA-binding transcriptional regulator 0.47 BWI76_RS22815 hybrid sensor histidine kinase/response regulator low > 92
Dickeya dianthicola 67-19 0.19 HGI48_RS07495 LysR family transcriptional regulator 0.47 HGI48_RS17080 two-component sensor histidine kinase BarA low > 71

Not shown: 13 genomes with orthologs for CSW01_00370 only; 23 genomes with orthologs for CSW01_12415 only