| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_13505 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 1.0 | CSW01_11705 | | MFS transporter | 0.59 | 15 |
| Dickeya dianthicola ME23 | 0.49 | DZA65_RS21510 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.20 | DZA65_RS05990 | | muropeptide MFS transporter AmpG | low | > 75 |
| Dickeya dianthicola 67-19 | 0.49 | HGI48_RS20465 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.20 | HGI48_RS05665 | | muropeptide MFS transporter AmpG | low | > 71 |
| Enterobacter asburiae PDN3 | 0.47 | EX28DRAFT_4403 | | 1,4-dihydroxy-2-naphthoate prenyltransferase (EC 2.5.1.74) | 0.19 | EX28DRAFT_2538 | | AmpG-like permease | low | > 76 |
| Escherichia coli ECRC62 | 0.47 | BNILDI_05640 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.20 | BNILDI_22705 | ampG | muropeptide MFS transporter AmpG | low | > 75 |
| Escherichia coli ECRC100 | 0.47 | OKFHMN_13745 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.20 | OKFHMN_08355 | ampG | muropeptide MFS transporter AmpG | low | > 79 |
| Escherichia coli ECRC102 | 0.47 | NIAGMN_11500 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.20 | NIAGMN_06410 | ampG | muropeptide MFS transporter AmpG | low | > 80 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.47 | OHPLBJKB_04121 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase | 0.20 | OHPLBJKB_03240 | | Protein AmpG | low | > 74 |
| Escherichia coli BW25113 | 0.47 | b3930 | menA | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI) | 0.20 | b0433 | ampG | muropeptide transporter (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 0.47 | JDDGAC_17370 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.20 | JDDGAC_12010 | ampG | muropeptide MFS transporter AmpG | low | > 87 |
| Escherichia coli ECOR27 | 0.47 | NOLOHH_05890 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.20 | NOLOHH_01290 | ampG | muropeptide MFS transporter AmpG | low | > 76 |
| Escherichia coli ECRC99 | 0.47 | KEDOAH_14415 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.20 | KEDOAH_19610 | ampG | muropeptide MFS transporter AmpG | — | — |
| Escherichia coli BL21 | 0.47 | ECD_03815 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase | 0.20 | ECD_00384 | | muropeptide transporter | low | > 61 |
| Escherichia coli ECRC101 | 0.47 | MCAODC_04245 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.20 | MCAODC_27580 | ampG | muropeptide MFS transporter AmpG | low | > 87 |
| Escherichia coli ECOR38 | 0.47 | HEPCGN_12390 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.20 | HEPCGN_06970 | ampG | muropeptide MFS transporter AmpG | low | > 88 |
| Klebsiella michiganensis M5al | 0.46 | BWI76_RS00745 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.19 | BWI76_RS06500 | | muropeptide transporter AmpG | low | > 92 |
| Escherichia fergusonii Becca | 0.46 | EFB2_04688 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase | 0.20 | EFB2_03624 | | Anhydromuropeptide permease | low | > 86 |
| Escherichia coli Nissle 1917 | 0.46 | ECOLIN_RS22630 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.20 | ECOLIN_RS02600 | | muropeptide MFS transporter AmpG | low | > 55 |
| Dickeya dadantii 3937 | 0.46 | DDA3937_RS00910 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.21 | DDA3937_RS05620 | | muropeptide MFS transporter AmpG | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.45 | GFF2312 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) | 0.19 | GFF4348 | | AmpG permease | low | > 78 |
| Enterobacter sp. TBS_079 | 0.45 | MPMX20_04539 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase | 0.20 | MPMX20_01024 | | Anhydromuropeptide permease | low | > 85 |
| Klebsiella pneumoniae MKP103 | 0.44 | KDGMDA_09255 | | 1 4-dihydroxy-2-naphthoate polyprenyltransferase | 0.19 | KDGMDA_14585 | | muropeptide MFS transporter AmpG | low | > 95 |
| Pectobacterium carotovorum WPP14 | 0.44 | HER17_RS00845 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.19 | HER17_RS15870 | | muropeptide MFS transporter AmpG | low | > 75 |
| Serratia liquefaciens MT49 | 0.44 | IAI46_24580 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.20 | IAI46_04990 | | muropeptide MFS transporter AmpG | low | > 87 |
| Erwinia tracheiphila HP pepo 2.2 | 0.41 | IJEDHG_12980 | | 1 4-dihydroxy-2-naphthoate polyprenyltransferase | 0.17 | IJEDHG_16420 | ampG | muropeptide MFS transporter AmpG | low | > 61 |
| Erwinia tracheiphila SCR3 | 0.41 | LU632_RS19680 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.17 | LU632_RS18370 | ampG | muropeptide MFS transporter AmpG | low | > 73 |
| Rahnella sp. WP5 | 0.41 | EX31_RS14250 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.20 | EX31_RS22225 | | muropeptide MFS transporter AmpG | low | > 89 |
| Cellulophaga baltica 18 | 0.33 | M666_RS13710 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase | 0.07 | M666_RS12970 | | AmpG family muropeptide MFS transporter | — | — |
| Phocaeicola dorei CL03T12C01 | 0.26 | ABI39_RS08105 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.06 | ABI39_RS12930 | | MFS transporter | — | — |
| Shewanella amazonensis SB2B | 0.25 | Sama_1366 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) | 0.27 | Sama_2556 | | AmpG protein, putative (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.24 | Shew_2558 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) | 0.26 | Shew_2892 | | major facilitator transporter (RefSeq) | low | > 60 |
| Parabacteroides merdae CL09T00C40 | 0.23 | HMPREF1078_RS10295 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.07 | HMPREF1078_RS13400 | | MFS transporter | — | — |
| Dechlorosoma suillum PS | 0.21 | Dsui_3320 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase | 0.16 | Dsui_0739 | | Major Facilitator Superfamily transporter | low | > 51 |
| Rhodospirillum rubrum S1H | 0.16 | Rru_A3388 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI) | 0.21 | Rru_A0147 | | Major facilitator superfamily MFS_1 (NCBI) | low | > 58 |
Not shown: 4 genomes with orthologs for CSW01_13505 only; 58 genomes with orthologs for CSW01_11705 only