Conservation of cofitness between CSW01_12480 and CSW01_11635 in Vibrio cholerae E7946 ATCC 55056

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12480 sigma-E factor negative regulatory protein RseA 1.0 CSW01_11635 DNA polymerase IV 0.48 8
Erwinia amylovora T8 0.36 OLJFJH_10220 anti-sigma-E factor RseA 0.55 OLJFJH_18440 DNA polymerase IV low > 58
Klebsiella pneumoniae MKP103 0.36 KDGMDA_28475 anti-sigma-E factor RseA 0.54 KDGMDA_13790 DNA polymerase IV low > 95
Klebsiella michiganensis M5al 0.35 BWI76_RS21350 anti-RNA polymerase sigma factor SigE 0.56 BWI76_RS05530 DNA polymerase IV low > 92
Escherichia coli ECRC98 0.35 JDDGAC_25045 rseA anti-sigma-E factor RseA 0.54 JDDGAC_13355 dinB DNA polymerase IV low > 87
Escherichia coli ECRC101 0.35 MCAODC_11910 rseA anti-sigma-E factor RseA 0.54 MCAODC_00250 dinB DNA polymerase IV low > 87
Escherichia coli ECRC102 0.35 NIAGMN_19150 rseA anti-sigma-E factor RseA 0.54 NIAGMN_07590 dinB DNA polymerase IV low > 80
Escherichia coli ECRC100 0.35 OKFHMN_21380 rseA anti-sigma-E factor RseA 0.54 OKFHMN_09730 dinB DNA polymerase IV — —
Escherichia coli ECRC99 0.35 KEDOAH_06840 rseA anti-sigma-E factor RseA 0.54 KEDOAH_18425 dinB DNA polymerase IV — —
Pantoea agglomerans CFBP13505 P0401 0.35 PagCFBP13505_RS14745 anti-sigma-E factor RseA 0.54 PagCFBP13505_RS09990 DNA polymerase IV — —
Pantoea sp. MT58 0.35 IAI47_04855 anti-sigma-E factor RseA 0.54 IAI47_15175 DNA polymerase IV low > 76
Rahnella sp. WP5 0.33 EX31_RS21805 anti-sigma-E factor RseA 0.55 EX31_RS21005 DNA polymerase IV low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF2108 Sigma factor RpoE negative regulatory protein RseA 0.53 GFF4104 DNA polymerase IV (EC 2.7.7.7) — —
Enterobacter asburiae PDN3 0.33 EX28DRAFT_0073 Negative regulator of sigma E activity 0.56 EX28DRAFT_2657 Nucleotidyltransferase/DNA polymerase involved in DNA repair low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.33 OHPLBJKB_01135 Anti-sigma-E factor RseA 0.54 OHPLBJKB_03407 DNA polymerase IV low > 74
Escherichia coli BW25113 0.32 b2572 rseA anti-sigma factor (NCBI) 0.54 b0231 dinB DNA polymerase IV (NCBI) low > 76
Pectobacterium carotovorum WPP14 0.32 HER17_RS05785 anti-sigma-E factor RseA 0.54 HER17_RS04670 DNA polymerase IV — —
Escherichia fergusonii Becca 0.32 EFB2_01324 Anti-sigma-E factor RseA 0.54 EFB2_03787 DNA polymerase IV low > 86
Escherichia coli Nissle 1917 0.32 ECOLIN_RS14555 anti-sigma-E factor RseA 0.54 ECOLIN_RS01780 DNA polymerase IV low > 55
Escherichia coli ECOR38 0.32 HEPCGN_20525 rseA anti-sigma-E factor RseA 0.54 HEPCGN_07825 dinB DNA polymerase IV low > 88
Escherichia coli ECRC62 0.32 BNILDI_11855 rseA anti-sigma-E factor RseA 0.54 BNILDI_00290 dinB DNA polymerase IV low > 75
Escherichia coli BL21 0.32 ECD_02466 anti-sigma factor 0.54 ECD_00226 DNA polymerase IV — —
Escherichia coli ECOR27 0.32 NOLOHH_13055 rseA anti-sigma-E factor RseA 0.54 NOLOHH_02095 dinB DNA polymerase IV low > 76
Erwinia tracheiphila SCR3 0.32 LU632_RS15420 rseA anti-sigma-E factor RseA 0.53 LU632_RS01150 dinB DNA polymerase IV — —
Enterobacter sp. TBS_079 0.32 MPMX20_03443 Anti-sigma-E factor RseA 0.56 MPMX20_00921 DNA polymerase IV low > 85
Dickeya dianthicola 67-19 0.31 HGI48_RS15845 anti-sigma-E factor RseA 0.52 HGI48_RS16645 DNA polymerase IV — —
Erwinia tracheiphila HP pepo 2.2 0.31 IJEDHG_01230 rseA anti-sigma-E factor RseA 0.54 IJEDHG_15455 dinB DNA polymerase IV — —
Dickeya dianthicola ME23 0.31 DZA65_RS16925 anti-sigma-E factor RseA 0.52 DZA65_RS17735 DNA polymerase IV low > 75
Dickeya dadantii 3937 0.30 DDA3937_RS15760 anti-sigma-E factor RseA 0.52 DDA3937_RS16575 DNA polymerase IV — —
Serratia liquefaciens MT49 0.29 IAI46_19580 anti-sigma-E factor RseA 0.54 IAI46_04405 DNA polymerase IV low > 87
Shewanella oneidensis MR-1 0.27 SO1343 rseA sigma-E factor negative regulatory protein (NCBI ptt file) 0.55 SO1114 dinP DNA-damage-inducible protein P (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.27 Shewana3_3031 anti sigma-E protein, RseA (RefSeq) 0.56 Shewana3_0949 DNA polymerase IV (RefSeq) — —
Shewanella loihica PV-4 0.26 Shew_1049 anti sigma-E protein, RseA (RefSeq) 0.54 Shew_2871 DNA polymerase IV (RefSeq) — —
Shewanella amazonensis SB2B 0.22 Sama_0875 sigma-E factor negative regulatory protein (RefSeq) 0.54 Sama_2527 DNA polymerase IV (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.20 MIT1002_02718 Sigma-E factor negative regulatory protein 0.53 MIT1002_03478 DNA polymerase IV low > 70

Not shown: 0 genomes with orthologs for CSW01_12480 only; 72 genomes with orthologs for CSW01_11635 only