Conservation of cofitness between CSW01_14440 and CSW01_10220 in Vibrio cholerae E7946 ATCC 55056

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_14440 redox-sensitive transcriptional activator SoxR 1.0 CSW01_10220 DNA topoisomerase III 0.49 6
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_6074 Redox-sensitive transcriptional activator SoxR 0.33 Pf6N2E2_972 DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster low > 103
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_20930 MerR family transcriptional regulator 0.33 AO356_21700 DNA topoisomerase III low > 104
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_2312 Redox-sensitive transcriptional activator SoxR 0.32 PfGW456L13_3568 DNA topoisomerase III (EC 5.99.1.2) low > 87
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.1627.1 Redox-sensitive transcriptional activator SoxR 0.32 Xcc-8004.2568.1 DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster — —
Pseudomonas sp. RS175 0.52 PFR28_02914 Redox-sensitive transcriptional activator SoxR 0.33 PFR28_01342 DNA topoisomerase 3 low > 88
Pseudomonas sp. DMC3 0.51 GFF4533 Redox-sensitive transcriptional activator SoxR 0.32 GFF1711 DNA topoisomerase 3 low > 89
Azospirillum brasilense Sp245 0.51 AZOBR_RS31925 MerR family transcriptional regulator 0.17 AZOBR_RS10830 DNA topoisomerase III low > 97
Pseudomonas simiae WCS417 0.50 PS417_09440 MerR family transcriptional regulator 0.33 PS417_10550 DNA topoisomerase III low > 88
Pseudomonas lactucae CFBP13502 0.50 GEMAOFIL_02110 Redox-sensitive transcriptional activator SoxR 0.33 GEMAOFIL_02205 DNA topoisomerase 3 low > 96
Pseudomonas orientalis W4I3 0.50 QF045_RS12070 redox-sensitive transcriptional activator SoxR 0.32 QF045_RS12525 DNA topoisomerase III low > 93
Pseudomonas fluorescens SBW25-INTG 0.50 PFLU_RS10090 redox-sensitive transcriptional activator SoxR 0.33 PFLU_RS10610 DNA topoisomerase III low > 109
Pseudomonas fluorescens SBW25 0.50 PFLU_RS10090 redox-sensitive transcriptional activator SoxR 0.33 PFLU_RS10610 DNA topoisomerase III low > 109
Erwinia amylovora T8 0.49 OLJFJH_03385 redox-sensitive transcriptional activator SoxR 0.54 OLJFJH_13255 DNA topoisomerase III low > 58
Escherichia coli ECRC100 0.48 OKFHMN_12870 soxR redox-sensitive transcriptional activator SoxR 0.57 OKFHMN_26830 topB DNA topoisomerase III low > 79
Escherichia coli ECRC101 0.48 MCAODC_03380 soxR redox-sensitive transcriptional activator SoxR 0.57 MCAODC_18580 topB DNA topoisomerase III low > 87
Escherichia coli ECRC98 0.48 JDDGAC_16505 soxR redox-sensitive transcriptional activator SoxR 0.57 JDDGAC_01405 topB DNA topoisomerase III low > 87
Escherichia coli ECRC102 0.48 NIAGMN_10715 soxR redox-sensitive transcriptional activator SoxR 0.57 NIAGMN_01235 topB DNA topoisomerase III low > 80
Escherichia coli BW25113 0.48 b4063 soxR DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing (NCBI) 0.57 b1763 topB DNA topoisomerase III (NCBI) low > 76
Escherichia coli ECRC99 0.48 KEDOAH_15280 soxR redox-sensitive transcriptional activator SoxR 0.57 KEDOAH_01280 topB DNA topoisomerase III — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_03978 Redox-sensitive transcriptional activator SoxR 0.57 OHPLBJKB_01969 DNA topoisomerase 3 low > 74
Escherichia coli ECRC62 0.48 BNILDI_06405 soxR redox-sensitive transcriptional activator SoxR 0.57 BNILDI_16125 topB DNA topoisomerase III low > 75
Escherichia coli ECOR27 0.48 NOLOHH_05120 soxR redox-sensitive transcriptional activator SoxR 0.57 NOLOHH_17340 topB DNA topoisomerase III low > 76
Escherichia coli BL21 0.48 ECD_03935 redox-sensitive transcriptional activator of soxS; autorepressor 0.57 ECD_01732 DNA topoisomerase III low > 61
Klebsiella pneumoniae MKP103 0.48 KDGMDA_10490 redox-sensitive transcriptional activator SoxR 0.56 KDGMDA_19285 DNA topoisomerase III low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF1442 Redox-sensitive transcriptional activator SoxR 0.56 GFF3486 DNA topoisomerase III (EC 5.99.1.2) low > 78
Pseudomonas sp. BP01 0.48 JOY50_RS22275 soxR redox-sensitive transcriptional activator SoxR 0.34 JOY50_RS06610 DNA topoisomerase III low > 84
Escherichia coli ECOR38 0.48 HEPCGN_11485 soxR redox-sensitive transcriptional activator SoxR 0.57 HEPCGN_05200 topB DNA topoisomerase III low > 88
Escherichia fergusonii Becca 0.48 EFB2_04528 Redox-sensitive transcriptional activator SoxR 0.57 EFB2_02231 DNA topoisomerase 3 low > 86
Klebsiella michiganensis M5al 0.48 BWI76_RS02000 transcriptional regulator 0.56 BWI76_RS11605 DNA topoisomerase III low > 92
Escherichia coli Nissle 1917 0.48 ECOLIN_RS23510 redox-sensitive transcriptional activator SoxR 0.57 ECOLIN_RS09830 DNA topoisomerase III — —
Enterobacter sp. TBS_079 0.48 MPMX20_00282 Redox-sensitive transcriptional activator SoxR 0.55 MPMX20_01853 DNA topoisomerase 3 low > 85
Enterobacter asburiae PDN3 0.47 EX28DRAFT_4241 redox-sensitive transcriptional activator SoxR 0.56 EX28DRAFT_1764 DNA topoisomerase III, bacteria and conjugative plasmid low > 76
Pseudomonas putida KT2440 0.47 PP_2060 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent 0.34 PP_4019 DNA topoisomerase III low > 96
Pseudomonas sp. SVBP6 0.47 COO64_RS19440 soxR redox-sensitive transcriptional activator SoxR 0.32 COO64_RS23235 DNA topoisomerase III low > 93
Cupriavidus basilensis FW507-4G11 0.23 RR42_RS28190 MerR family transcriptional regulator 0.28 RR42_RS24470 hypothetical protein low > 128

Not shown: 12 genomes with orthologs for CSW01_14440 only; 28 genomes with orthologs for CSW01_10220 only