Conservation of cofitness between CSW01_07480 and CSW01_05280 in Vibrio cholerae E7946 ATCC 55056

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L 1.0 CSW01_05280 uridine kinase 0.71 3
Pantoea agglomerans CFBP13505 P0401 0.57 PagCFBP13505_RS04640 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.74 PagCFBP13505_RS01015 uridine kinase low > 74
Escherichia coli ECRC62 0.57 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.78 BNILDI_14520 udk uridine kinase low > 75
Escherichia coli ECOR27 0.57 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.78 NOLOHH_15610 udk uridine kinase low > 76
Escherichia coli ECRC100 0.57 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.78 OKFHMN_24270 udk uridine kinase low > 79
Escherichia coli ECRC101 0.57 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.78 MCAODC_20670 udk uridine kinase low > 87
Escherichia coli ECRC102 0.57 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.78 NIAGMN_22215 udk uridine kinase low > 80
Escherichia coli ECRC99 0.57 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.78 KEDOAH_03880 udk uridine kinase — —
Escherichia fergusonii Becca 0.57 EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L 0.78 EFB2_01788 Uridine kinase low > 86
Escherichia coli ECOR38 0.57 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.78 HEPCGN_02970 udk uridine kinase low > 88
Escherichia coli Nissle 1917 0.57 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.78 ECOLIN_RS12160 uridine kinase low > 55
Escherichia coli BW25113 0.57 b0948 ycbY predicted methyltransferase (NCBI) 0.78 b2066 udk uridine/cytidine kinase (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L 0.78 OHPLBJKB_01640 Uridine kinase low > 74
Escherichia coli ECRC98 0.57 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.78 JDDGAC_28380 udk uridine kinase low > 87
Escherichia coli BL21 0.57 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent 0.78 ECD_01972 uridine/cytidine kinase low > 61
Pantoea sp. MT58 0.57 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.75 IAI47_06905 uridine kinase low > 76
Pectobacterium carotovorum WPP14 0.56 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.75 HER17_RS14650 uridine kinase low > 75
Dickeya dianthicola 67-19 0.56 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.75 HGI48_RS06705 uridine kinase low > 71
Dickeya dianthicola ME23 0.56 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.75 DZA65_RS07060 uridine kinase low > 75
Serratia liquefaciens MT49 0.56 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.76 IAI46_07975 uridine kinase low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.77 GFF3861 Uridine kinase (EC 2.7.1.48) [C1] low > 78
Dickeya dadantii 3937 0.56 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.75 DDA3937_RS06690 uridine kinase low > 74
Enterobacter sp. TBS_079 0.56 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L 0.76 MPMX20_03048 Uridine kinase low > 85
Erwinia amylovora T8 0.55 OLJFJH_15975 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.76 OLJFJH_12000 uridine kinase low > 58
Enterobacter asburiae PDN3 0.55 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase 0.76 EX28DRAFT_0488 uridine kinase (EC 2.7.1.48) low > 76
Rahnella sp. WP5 0.55 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.77 EX31_RS11545 uridine kinase low > 89
Klebsiella michiganensis M5al 0.55 BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase 0.75 BWI76_RS19125 uridine kinase — —
Klebsiella pneumoniae MKP103 0.55 KDGMDA_18160 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.76 KDGMDA_26260 uridine kinase 0.36 22
Erwinia tracheiphila SCR3 0.54 LU632_RS09965 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.74 LU632_RS08740 udk uridine kinase low > 73
Erwinia tracheiphila HP pepo 2.2 0.53 IJEDHG_20480 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.70 IJEDHG_18840 udk uridine kinase low > 61
Shewanella loihica PV-4 0.50 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.76 Shew_1575 uridine kinase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.50 Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.77 Sama_2047 uridine kinase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.49 SO1851 conserved hypothetical protein (NCBI ptt file) 0.76 SO2617 udk uridine kinase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.49 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.76 Shewana3_1762 uridine kinase (RefSeq) — —
Alteromonas macleodii MIT1002 0.44 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L 0.51 MIT1002_03498 Uridine kinase low > 70

Not shown: 34 genomes with orthologs for CSW01_07480 only; 11 genomes with orthologs for CSW01_05280 only