Conservation of cofitness between CSW01_03320 and CSW01_05110 in Vibrio cholerae E7946 ATCC 55056

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03320 serine-type D-Ala-D-Ala carboxypeptidase 1.0 CSW01_05110 bacteriocin production protein 0.54 6
Klebsiella pneumoniae MKP103 0.33 KDGMDA_05980 serine-type D-Ala-D-Ala carboxypeptidase 0.65 KDGMDA_27190 colicin V production protein low > 95
Klebsiella michiganensis M5al 0.32 BWI76_RS25165 serine-type D-Ala-D-Ala carboxypeptidase 0.65 BWI76_RS20355 colicin V production protein low > 92
Dickeya dianthicola ME23 0.32 DZA65_RS03175 serine-type D-Ala-D-Ala carboxypeptidase 0.67 DZA65_RS15340 colicin V production protein low > 75
Enterobacter asburiae PDN3 0.32 EX28DRAFT_3234 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family 0.67 EX28DRAFT_0291 Uncharacterized membrane protein, required for colicin V production low > 76
Pectobacterium carotovorum WPP14 0.32 HER17_RS18335 serine-type D-Ala-D-Ala carboxypeptidase 0.67 HER17_RS07015 colicin V production protein low > 75
Enterobacter sp. TBS_079 0.32 MPMX20_04086 D-alanyl-D-alanine carboxypeptidase DacB 0.67 MPMX20_03248 Colicin V production protein low > 85
Dickeya dianthicola 67-19 0.32 HGI48_RS03180 serine-type D-Ala-D-Ala carboxypeptidase 0.67 HGI48_RS14410 colicin V production protein low > 71
Escherichia fergusonii Becca 0.32 EFB2_00641 D-alanyl-D-alanine carboxypeptidase DacB 0.64 EFB2_01545 Colicin V production protein low > 86
Escherichia coli ECOR38 0.32 HEPCGN_16915 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.64 HEPCGN_21905 cvpA colicin V production protein low > 88
Escherichia coli ECOR27 0.32 NOLOHH_09840 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.64 NOLOHH_14330 cvpA colicin V production protein low > 76
Escherichia coli BW25113 0.32 b3182 dacB D-alanyl-D-alanine carboxypeptidase (NCBI) 0.65 b2313 cvpA membrane protein required for colicin V production (NCBI) 0.32 37
Escherichia coli ECRC62 0.32 BNILDI_01695 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.64 BNILDI_13250 cvpA colicin V production protein low > 75
Dickeya dadantii 3937 0.32 DDA3937_RS03010 serine-type D-Ala-D-Ala carboxypeptidase 0.67 DDA3937_RS14440 colicin V production protein low > 74
Escherichia coli Nissle 1917 0.32 ECOLIN_RS18325 serine-type D-Ala-D-Ala carboxypeptidase 0.64 ECOLIN_RS13410 colicin V production protein low > 55
Escherichia coli BL21 0.32 ECD_03047 D-alanyl-D-alanine carboxypeptidase 0.64 ECD_02238 colicin V production protein low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_00518 D-alanyl-D-alanine carboxypeptidase DacB 0.64 OHPLBJKB_01392 Colicin V production protein low > 74
Escherichia coli ECRC102 0.32 NIAGMN_15800 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.63 NIAGMN_20480 cvpA colicin V production protein low > 80
Escherichia coli ECRC98 0.32 JDDGAC_21665 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.63 JDDGAC_26670 cvpA colicin V production protein low > 87
Escherichia coli ECRC99 0.32 KEDOAH_10110 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.63 KEDOAH_05485 cvpA colicin V production protein — —
Escherichia coli ECRC101 0.32 MCAODC_08560 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.63 MCAODC_13750 cvpA colicin V production protein low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.32 GFF2924 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.63 GFF1928 Colicin V production protein low > 78
Escherichia coli ECRC100 0.32 OKFHMN_18040 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.63 OKFHMN_22710 cvpA colicin V production protein low > 79
Pantoea sp. MT58 0.32 IAI47_17085 serine-type D-Ala-D-Ala carboxypeptidase 0.67 IAI47_06270 colicin V production protein low > 76
Pantoea agglomerans CFBP13505 P0401 0.31 PagCFBP13505_RS09180 serine-type D-Ala-D-Ala carboxypeptidase 0.67 PagCFBP13505_RS00225 colicin V production protein low > 74
Erwinia amylovora T8 0.31 OLJFJH_07180 serine-type D-Ala-D-Ala carboxypeptidase 0.65 OLJFJH_11275 colicin V production protein low > 58
Erwinia tracheiphila HP pepo 2.2 0.31 IJEDHG_13860 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.66 IJEDHG_17910 cvpA colicin V production protein low > 61
Rahnella sp. WP5 0.31 EX31_RS08600 serine-type D-Ala-D-Ala carboxypeptidase 0.68 EX31_RS19575 colicin V production protein low > 89
Serratia liquefaciens MT49 0.31 IAI46_01875 serine-type D-Ala-D-Ala carboxypeptidase 0.67 IAI46_17815 colicin V production protein low > 86
Shewanella oneidensis MR-1 0.24 SO2394 dacB penicillin-binding protein 4 (NCBI ptt file) 0.67 SO3065 colicin V production protein (NCBI ptt file) low > 76
Herbaspirillum seropedicae SmR1 0.08 HSERO_RS16870 D-alanyl-D-alanine carboxypeptidase 0.22 HSERO_RS16450 colicin V production protein low > 78
Sphingobium sp. HT1-2 0.08 GFF4681 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.19 GFF1894 Colicin V production protein low > 95
Variovorax sp. OAS795 0.07 ABID97_RS01685 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.16 ABID97_RS21640 CvpA family protein — —
Paraburkholderia bryophila 376MFSha3.1 0.07 H281DRAFT_04181 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) 0.20 H281DRAFT_06061 membrane protein required for colicin V production low > 103
Acidovorax sp. GW101-3H11 0.07 Ac3H11_670 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.20 Ac3H11_2609 Colicin V production protein — —

Not shown: 23 genomes with orthologs for CSW01_03320 only; 16 genomes with orthologs for CSW01_05110 only