Conservation of cofitness between CSW01_00255 and CSW01_04870 in Vibrio cholerae E7946 ATCC 55056

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00255 DNA topoisomerase 1.0 CSW01_04870 ribosome silencing factor 0.43 5
Enterobacter sp. TBS_079 0.53 MPMX20_04191 DNA topoisomerase 1 0.67 MPMX20_01296 Ribosomal silencing factor RsfS low > 85
Rahnella sp. WP5 0.53 EX31_RS15960 hypothetical protein 0.65 EX31_RS23130 ribosome silencing factor low > 89
Shewanella sp. ANA-3 0.53 Shewana3_0039 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) 0.61 Shewana3_0997 iojap-like protein (RefSeq) — —
Klebsiella michiganensis M5al 0.52 BWI76_RS25655 DNA topoisomerase type IA zn finger domain-containing protein 0.65 BWI76_RS08045 ribosome silencing factor RsfS — —
Shewanella oneidensis MR-1 0.52 SO0036 topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) 0.62 SO1170 iojap domain protein (NCBI ptt file) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF2395 Similar to C-terminal Zn-finger domain of DNA topoisomerase I 0.65 GFF4550 Iojap protein low > 78
Escherichia fergusonii Becca 0.51 EFB2_00540 DNA topoisomerase 1 0.67 EFB2_03455 Ribosomal silencing factor RsfS low > 86
Escherichia coli ECOR27 0.51 NOLOHH_09345 yrdD Uncharacterized protein YrdD 0.67 NOLOHH_23730 rsfS ribosome silencing factor low > 75
Escherichia coli Nissle 1917 0.51 ECOLIN_RS18850 type I DNA topoisomerase 0.67 ECOLIN_RS03470 ribosome silencing factor — —
Escherichia coli ECRC62 0.51 BNILDI_02175 yrdD Uncharacterized protein YrdD 0.67 BNILDI_21740 rsfS ribosome silencing factor low > 75
Escherichia coli ECOR38 0.51 HEPCGN_16375 yrdD Uncharacterized protein YrdD 0.67 HEPCGN_00920 rsfS ribosome silencing factor low > 87
Pectobacterium carotovorum WPP14 0.51 HER17_RS02240 topoisomerase DNA-binding C4 zinc finger domain-containing protein 0.71 HER17_RS15235 ribosome silencing factor low > 75
Escherichia coli BW25113 0.51 b3283 yrdD predicted DNA topoisomerase (NCBI) 0.67 b0637 ybeB orf, hypothetical protein (VIMSS) — —
Escherichia coli ECRC100 0.51 OKFHMN_17555 yrdD Uncharacterized protein YrdD 0.67 OKFHMN_07355 rsfS ribosome silencing factor low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_00420 DNA topoisomerase 1 0.67 OHPLBJKB_03069 Ribosomal silencing factor RsfS low > 73
Escherichia coli ECRC99 0.51 KEDOAH_10595 yrdD Uncharacterized protein YrdD 0.67 KEDOAH_20615 rsfS ribosome silencing factor — —
Escherichia coli ECRC102 0.51 NIAGMN_15315 yrdD Uncharacterized protein YrdD 0.67 NIAGMN_05410 rsfS ribosome silencing factor — —
Escherichia coli ECRC101 0.51 MCAODC_08075 yrdD Uncharacterized protein YrdD 0.67 MCAODC_26570 rsfS ribosome silencing factor low > 87
Escherichia coli ECRC98 0.51 JDDGAC_21175 yrdD Uncharacterized protein YrdD 0.67 JDDGAC_11000 rsfS ribosome silencing factor low > 86
Escherichia coli BL21 0.51 ECD_03134 ssDNA-binding protein, function unknown 0.67 ECD_00606 ribosomal silencing factor low > 61
Serratia liquefaciens MT49 0.50 IAI46_23250 topoisomerase DNA-binding C4 zinc finger domain-containing protein 0.65 IAI46_05940 ribosome silencing factor — —
Erwinia amylovora T8 0.49 OLJFJH_03695 DNA topoisomerase I ssDNA-binding Zn-finger and Zn-ribbon domains 0.66 OLJFJH_17215 ribosome silencing factor low > 58
Pantoea sp. MT58 0.49 IAI47_02305 topoisomerase DNA-binding C4 zinc finger domain-containing protein 0.70 IAI47_14015 ribosome silencing factor low > 76
Shewanella loihica PV-4 0.48 Shew_3731 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) 0.57 Shew_2933 iojap-like protein (RefSeq) — —
Shewanella amazonensis SB2B 0.48 Sama_0048 topoisomerase DNA-binding C4 zinc finger domain-containing protein (RefSeq) 0.58 Sama_2586 iojap domain-containing protein (RefSeq) low > 62
Erwinia tracheiphila SCR3 0.48 LU632_RS22455 topoisomerase DNA-binding C4 zinc finger domain-containing protein 0.59 LU632_RS16365 rsfS ribosome silencing factor low > 74
Dickeya dadantii 3937 0.47 DDA3937_RS22495 topoisomerase DNA-binding C4 zinc finger domain-containing protein 0.69 DDA3937_RS06180 ribosome silencing factor low > 74
Dickeya dianthicola ME23 0.47 DZA65_RS20325 hypothetical protein 0.70 DZA65_RS06570 ribosome silencing factor low > 75
Alteromonas macleodii MIT1002 0.47 MIT1002_00024 DNA topoisomerase 1 0.59 MIT1002_01853 Ribosomal silencing factor RsfS low > 70
Dickeya dianthicola 67-19 0.47 HGI48_RS19200 topoisomerase DNA-binding C4 zinc finger domain-containing protein 0.71 HGI48_RS06225 ribosome silencing factor low > 71

Not shown: 1 genomes with orthologs for CSW01_00255 only; 17 genomes with orthologs for CSW01_04870 only