Conservation of cofitness between CSW01_10750 and CSW01_04845 in Vibrio cholerae E7946 ATCC 55056

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10750 outer membrane protein assembly factor BamC 1.0 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 0.44 13
Pectobacterium carotovorum WPP14 0.27 HER17_RS15410 outer membrane protein assembly factor BamC 0.58 HER17_RS15260 D-alanyl-D-alanine carboxypeptidase DacA low > 75
Serratia liquefaciens MT49 0.27 IAI46_18775 outer membrane protein assembly factor BamC 0.56 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA low > 87
Dickeya dianthicola 67-19 0.27 HGI48_RS06115 outer membrane protein assembly factor BamC 0.57 HGI48_RS06200 D-alanyl-D-alanine carboxypeptidase DacA low > 71
Dickeya dianthicola ME23 0.26 DZA65_RS06465 outer membrane protein assembly factor BamC 0.56 DZA65_RS06545 D-alanyl-D-alanine carboxypeptidase DacA low > 75
Dickeya dadantii 3937 0.26 DDA3937_RS06070 outer membrane protein assembly factor BamC 0.57 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Rahnella sp. WP5 0.25 EX31_RS22745 outer membrane protein assembly factor BamC 0.57 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA low > 89
Erwinia amylovora T8 0.25 OLJFJH_10640 outer membrane protein assembly factor BamC 0.55 OLJFJH_17245 D-alanyl-D-alanine carboxypeptidase DacA low > 58
Pantoea agglomerans CFBP13505 P0401 0.24 PagCFBP13505_RS15160 outer membrane protein assembly factor BamC 0.56 PagCFBP13505_RS03265 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Erwinia tracheiphila HP pepo 2.2 0.24 IJEDHG_18440 bamC outer membrane protein assembly factor BamC 0.56 IJEDHG_02480 D-alanyl-D-alanine carboxypeptidase DacC low > 61
Erwinia tracheiphila SCR3 0.24 LU632_RS08330 bamC outer membrane protein assembly factor BamC 0.56 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.44 28
Pantoea sp. MT58 0.24 IAI47_05270 outer membrane protein assembly factor BamC 0.57 IAI47_14040 D-alanyl-D-alanine carboxypeptidase DacA low > 76
Klebsiella michiganensis M5al 0.23 BWI76_RS20900 outer membrane protein assembly factor BamC 0.55 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase low > 92
Klebsiella pneumoniae MKP103 0.23 KDGMDA_27740 outer membrane protein assembly factor BamC 0.55 KDGMDA_16380 D-alanyl-D-alanine carboxypeptidase DacA 0.70 5
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.23 GFF2181 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor 0.55 GFF4545 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 78
Enterobacter asburiae PDN3 0.23 EX28DRAFT_0183 Uncharacterized lipoprotein 0.55 EX28DRAFT_2331 D-alanyl-D-alanine carboxypeptidase low > 76
Escherichia coli ECRC62 0.22 BNILDI_12390 bamC outer membrane protein assembly factor BamC 0.55 BNILDI_21765 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 75
Escherichia coli BW25113 0.22 b2477 nlpB lipoprotein-34 (VIMSS) 0.55 b0632 dacA D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) low > 76
Escherichia coli ECRC101 0.22 MCAODC_12450 bamC outer membrane protein assembly factor BamC 0.55 MCAODC_26595 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 87
Escherichia coli BL21 0.22 ECD_02369 BamABCDE complex OM biogenesis lipoprotein 0.55 ECD_00601 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) low > 61
Escherichia coli ECRC99 0.22 KEDOAH_06300 bamC outer membrane protein assembly factor BamC 0.55 KEDOAH_20590 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.22 OHPLBJKB_01252 Outer membrane protein assembly factor BamC 0.55 OHPLBJKB_03074 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Escherichia coli ECRC102 0.22 NIAGMN_19690 bamC outer membrane protein assembly factor BamC 0.55 NIAGMN_05435 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 80
Escherichia coli ECRC100 0.22 OKFHMN_21920 bamC outer membrane protein assembly factor BamC 0.55 OKFHMN_07380 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 79
Escherichia coli ECRC98 0.22 JDDGAC_25865 bamC outer membrane protein assembly factor BamC 0.55 JDDGAC_11025 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 87
Escherichia coli ECOR27 0.22 NOLOHH_13580 bamC outer membrane protein assembly factor BamC 0.55 NOLOHH_23755 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 76
Escherichia coli Nissle 1917 0.22 ECOLIN_RS14140 outer membrane protein assembly factor BamC 0.55 ECOLIN_RS03445 D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia fergusonii Becca 0.22 EFB2_01409 Outer membrane protein assembly factor BamC 0.54 EFB2_03460 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Escherichia coli ECOR38 0.22 HEPCGN_21090 bamC outer membrane protein assembly factor BamC 0.55 HEPCGN_00895 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 88
Enterobacter sp. TBS_079 0.22 MPMX20_03339 Outer membrane protein assembly factor BamC 0.55 MPMX20_01291 D-alanyl-D-alanine carboxypeptidase DacA 0.16 68
Shewanella sp. ANA-3 0.14 Shewana3_1657 NlpB/DapX family lipoprotein (RefSeq) 0.69 Shewana3_0991 penicillin-binding protein 6 (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.14 MIT1002_02206 Outer membrane protein assembly factor BamC precursor 0.62 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor — —
Shewanella oneidensis MR-1 0.14 SO1880 nlpB lipoprotein-34 NlpB (NCBI ptt file) 0.69 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Shewanella loihica PV-4 0.12 Shew_1849 NlpB/DapX family lipoprotein (RefSeq) 0.68 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Shewanella amazonensis SB2B 0.12 Sama_1907 lipoprotein-34 NlpB (RefSeq) 0.69 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Kangiella aquimarina DSM 16071 0.12 B158DRAFT_2445 Beta-barrel assembly machine subunit BamC 0.50 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase — —

Not shown: 0 genomes with orthologs for CSW01_10750 only; 63 genomes with orthologs for CSW01_04845 only