Conservation of cofitness between CSW01_01710 and CSW01_04510 in Vibrio cholerae E7946 ATCC 55056

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01710 Rsd/AlgQ family anti-sigma factor 1.0 CSW01_04510 50S ribosomal protein L31 type B 0.56 19
Serratia liquefaciens MT49 0.32 IAI46_01325 Rsd/AlgQ family anti-sigma factor 0.65 IAI46_05180 type B 50S ribosomal protein L31 low > 87
Pantoea sp. MT58 0.31 IAI47_18080 Rsd/AlgQ family anti-sigma factor 0.63 IAI47_14520 type B 50S ribosomal protein L31 low > 76
Pantoea agglomerans CFBP13505 P0401 0.31 PagCFBP13505_RS22615 Rsd/AlgQ family anti-sigma factor 0.62 PagCFBP13505_RS10675 type B 50S ribosomal protein L31 low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF4197 Regulator of sigma D 0.59 GFF4373 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent low > 78
Escherichia coli ECRC98 0.29 JDDGAC_16995 rsd sigma D regulator 0.69 JDDGAC_12830 rpmE2-1 type B 50S ribosomal protein L31 low > 87
Escherichia coli ECOR27 0.29 NOLOHH_05515 rsd sigma D regulator 0.69 NOLOHH_01965 rpmE2-1 type B 50S ribosomal protein L31 low > 76
Escherichia coli ECRC99 0.29 KEDOAH_14790 rsd sigma D regulator 0.69 KEDOAH_18760 rpmE2-1 type B 50S ribosomal protein L31 — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_04055 Regulator of sigma D 0.69 OHPLBJKB_03385 50S ribosomal protein L31 type B low > 74
Escherichia coli ECRC101 0.29 MCAODC_03870 rsd sigma D regulator 0.69 MCAODC_28405 rpmE2-1 type B 50S ribosomal protein L31 low > 87
Escherichia coli BW25113 0.29 b3995 rsd stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) 0.69 b0296 ykgM 50S ribosomal protein L31 (NCBI) low > 76
Escherichia coli ECRC102 0.29 NIAGMN_11120 rsd sigma D regulator 0.69 NIAGMN_07245 rpmE2-1 type B 50S ribosomal protein L31 low > 80
Escherichia coli ECRC62 0.29 BNILDI_06010 rsd sigma D regulator 0.69 BNILDI_00085 rpmE2-1 type B 50S ribosomal protein L31 low > 75
Escherichia coli ECRC100 0.29 OKFHMN_13370 rsd sigma D regulator 0.69 OKFHMN_09190 rpmE2-1 type B 50S ribosomal protein L31 low > 79
Escherichia coli BL21 0.29 ECD_03872 stationary phase protein, binds sigma 70 RNA polymerase subunit 0.69 ECD_00255 50S ribosomal protein L31 type B; alternative zinc-limitation L31 protein low > 61
Escherichia coli ECOR38 0.29 HEPCGN_12005 rsd sigma D regulator 0.69 HEPCGN_07710 rpmE2-1 type B 50S ribosomal protein L31 low > 88
Enterobacter sp. TBS_079 0.29 MPMX20_00218 Regulator of sigma D 0.64 MPMX20_01056 50S ribosomal protein L31 type B low > 85
Klebsiella pneumoniae MKP103 0.29 KDGMDA_10045 sigma D regulator 0.63 KDGMDA_14795 type B 50S ribosomal protein L31 low > 95
Rahnella sp. WP5 0.29 EX31_RS16820 Rsd/AlgQ family anti-sigma factor 0.66 EX31_RS22465 type B 50S ribosomal protein L31 low > 89
Escherichia fergusonii Becca 0.29 EFB2_04616 Regulator of sigma D 0.69 EFB2_03748 50S ribosomal protein L31 type B low > 86
Escherichia coli Nissle 1917 0.29 ECOLIN_RS23045 sigma D regulator 0.69 ECOLIN_RS01925 type B 50S ribosomal protein L31 low > 55
Klebsiella michiganensis M5al 0.28 BWI76_RS01560 Rsd/AlgQ family anti-sigma factor 0.61 BWI76_RS06735 50S ribosomal protein L31 low > 92
Enterobacter asburiae PDN3 0.27 EX28DRAFT_4537 Regulator of sigma D 0.64 EX28DRAFT_2504 ribosomal protein L31 low > 76
Pectobacterium carotovorum WPP14 0.27 HER17_RS20375 Rsd/AlgQ family anti-sigma factor 0.68 HER17_RS15745 type B 50S ribosomal protein L31 low > 75
Pseudomonas aeruginosa PA14 0.26 IKLFDK_27180 Alginate regulatory protein AlgQ 0.61 IKLFDK_18385 type B 50S ribosomal protein L31 low > 98
Pseudomonas aeruginosa PUPa3 0.26 DQ20_RS49965 rsd;go_process=regulation sigma D regulator 0.61 DQ20_RS42155 type B 50S ribosomal protein L31 low > 101
Pseudomonas aeruginosa MRSN321 0.26 DY961_RS12155 rsd;go_process=regulation sigma D regulator 0.61 DY961_RS14975 type B 50S ribosomal protein L31 low > 100
Erwinia tracheiphila SCR3 0.25 LU632_RS00975 Rsd/AlgQ family anti-sigma factor 0.61 LU632_RS18190 type B 50S ribosomal protein L31 low > 73
Erwinia tracheiphila HP pepo 2.2 0.25 IJEDHG_10890 rsd sigma D regulator 0.61 IJEDHG_16575 rpmE type B 50S ribosomal protein L31 low > 61
Erwinia amylovora T8 0.25 OLJFJH_06745 sigma D regulator 0.54 OLJFJH_17860 type B 50S ribosomal protein L31 low > 58
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_0056 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 0.59 Psyr_3920 LSU ribosomal protein L31P 0.45 68
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_0056 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 0.59 Psyr_3920 LSU ribosomal protein L31P low > 86
Pseudomonas sp. BP01 0.22 JOY50_RS18725 Rsd/AlgQ family anti-sigma factor 0.55 JOY50_RS14120 type B 50S ribosomal protein L31 — —
Dickeya dianthicola ME23 0.21 DZA65_RS01220 Rsd/AlgQ family anti-sigma factor 0.64 DZA65_RS06110 type B 50S ribosomal protein L31 low > 75
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor 0.63 PFLU_RS05495 type B 50S ribosomal protein L31 low > 109
Pseudomonas fluorescens SBW25 0.21 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor 0.63 PFLU_RS05495 type B 50S ribosomal protein L31 low > 109
Dickeya dianthicola 67-19 0.20 HGI48_RS01175 sigma D regulator 0.64 HGI48_RS05785 type B 50S ribosomal protein L31 low > 71
Dickeya dadantii 3937 0.20 DDA3937_RS01180 Rsd/AlgQ family anti-sigma factor 0.64 DDA3937_RS05730 type B 50S ribosomal protein L31 low > 74

Not shown: 21 genomes with orthologs for CSW01_01710 only; 37 genomes with orthologs for CSW01_04510 only