Conservation of cofitness between CSW01_01555 and CSW01_03695 in Vibrio cholerae E7946 ATCC 55056

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01555 ATP-dependent RNA helicase RhlB 1.0 CSW01_03695 ribosomal large subunit pseudouridine synthase D 0.90 17
Pantoea sp. MT58 0.73 IAI47_18535 ATP-dependent RNA helicase RhlB 0.70 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF2892 ATP-dependent RNA helicase RhlB 0.70 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.88 50
Escherichia coli ECOR38 0.72 HEPCGN_13310 rhlB ATP-dependent RNA helicase RhlB 0.70 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_04274 ATP-dependent RNA helicase RhlB 0.70 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D low > 73
Escherichia fergusonii Becca 0.72 EFB2_04858 ATP-dependent RNA helicase RhlB 0.70 EFB2_01296 Ribosomal large subunit pseudouridine synthase D low > 86
Escherichia coli BW25113 0.72 b3780 rhlB ATP-dependent RNA helicase (NCBI) 0.70 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) — —
Escherichia coli Nissle 1917 0.72 ECOLIN_RS21700 ATP-dependent RNA helicase RhlB 0.70 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.64 26
Escherichia coli ECRC62 0.72 BNILDI_04790 rhlB ATP-dependent RNA helicase RhlB 0.71 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Escherichia coli ECOR27 0.72 NOLOHH_06735 rhlB ATP-dependent RNA helicase RhlB 0.71 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Escherichia coli BL21 0.72 ECD_03658 ATP-dependent RNA helicase 0.70 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase low > 61
Escherichia coli ECRC101 0.72 MCAODC_05105 rhlB ATP-dependent RNA helicase RhlB 0.70 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli ECRC98 0.72 JDDGAC_18220 rhlB ATP-dependent RNA helicase RhlB 0.70 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 86
Escherichia coli ECRC100 0.72 OKFHMN_14600 rhlB ATP-dependent RNA helicase RhlB 0.70 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 80
Escherichia coli ECRC99 0.72 KEDOAH_13550 rhlB ATP-dependent RNA helicase RhlB 0.70 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli ECRC102 0.72 NIAGMN_12355 rhlB ATP-dependent RNA helicase RhlB 0.70 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Enterobacter asburiae PDN3 0.72 EX28DRAFT_4451 Superfamily II DNA and RNA helicases 0.70 EX28DRAFT_2695 pseudouridine synthase, RluA family low > 76
Klebsiella michiganensis M5al 0.71 BWI76_RS01065 ATP-dependent RNA helicase RhlB 0.69 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase low > 92
Enterobacter sp. TBS_079 0.71 MPMX20_04492 ATP-dependent RNA helicase RhlB 0.70 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D 0.29 16
Pectobacterium carotovorum WPP14 0.71 HER17_RS01130 ATP-dependent RNA helicase RhlB 0.71 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Rahnella sp. WP5 0.71 EX31_RS15040 ATP-dependent RNA helicase RhlB 0.69 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.62 12
Serratia liquefaciens MT49 0.71 IAI46_00575 ATP-dependent RNA helicase RhlB 0.70 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.51 59
Erwinia amylovora T8 0.71 OLJFJH_06265 ATP-dependent RNA helicase RhlB 0.70 OLJFJH_09725 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.63 38
Erwinia tracheiphila SCR3 0.71 LU632_RS24265 rhlB ATP-dependent RNA helicase RhlB 0.68 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Dickeya dadantii 3937 0.70 DDA3937_RS20080 ATP-dependent RNA helicase RhlB 0.70 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS20225 ATP-dependent RNA helicase RhlB 0.70 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.85 12
Dickeya dianthicola ME23 0.70 DZA65_RS21270 ATP-dependent RNA helicase RhlB 0.70 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Shewanella loihica PV-4 0.67 Shew_0339 ATP-dependent RNA helicase RhlB (RefSeq) 0.60 Shew_2950 RluA family pseudouridine synthase (RefSeq) low > 60
Shewanella sp. ANA-3 0.65 Shewana3_0410 ATP-dependent RNA helicase RhlB (RefSeq) 0.60 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) low > 73
Shewanella amazonensis SB2B 0.64 Sama_3215 ATP-dependent RNA helicase RhlB (RefSeq) 0.59 Sama_2605 pseudouridylate synthase (RefSeq) — —
Alteromonas macleodii MIT1002 0.60 MIT1002_00515 ATP-dependent RNA helicase RhlB 0.59 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D low > 70
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_0413 Superfamily II DNA and RNA helicases 0.53 B158DRAFT_2532 Pseudouridylate synthases, 23S RNA-specific 0.78 1
Marinobacter adhaerens HP15 0.38 HP15_2099 DEAD/DEAH box helicase domain protein 0.51 HP15_527 pseudouridine synthase, RluA family low > 73
Pseudomonas sp. SVBP6 0.36 COO64_RS11685 rhlB ATP-dependent RNA helicase RhlB 0.54 COO64_RS11055 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 93
Pseudomonas putida KT2440 0.35 PP_1295 ATP-dependent RNA helicase RhlB 0.53 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase — —
Pseudomonas sp. S08-1 0.35 OH686_17780 ATP-dependent RNA helicase RhlB 0.53 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase low > 80
Acinetobacter radioresistens SK82 0.35 MPMX26_01113 ATP-dependent RNA helicase RhlB 0.43 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D low > 36
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_920 ATP-dependent RNA helicase RhlB 0.54 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —

Not shown: 2 genomes with orthologs for CSW01_01555 only; 65 genomes with orthologs for CSW01_03695 only