Conservation of cofitness between CSW01_12705 and CSW01_03640 in Vibrio cholerae E7946 ATCC 55056

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12705 RNA polymerase-associated protein RapA 1.0 CSW01_03640 bifunctional chorismate mutase/prephenate dehydrogenase 0.64 5
Serratia liquefaciens MT49 0.67 IAI46_03275 RNA polymerase-associated protein RapA 0.68 IAI46_03960 bifunctional chorismate mutase/prephenate dehydrogenase low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF183 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.65 GFF4177 Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) low > 78
Dickeya dadantii 3937 0.65 DDA3937_RS18235 RNA polymerase-associated protein RapA 0.65 DDA3937_RS16135 bifunctional chorismate mutase/prephenate dehydrogenase — —
Rahnella sp. WP5 0.65 EX31_RS03745 RNA polymerase-associated protein RapA 0.68 EX31_RS07590 bifunctional chorismate mutase/prephenate dehydrogenase low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_03599 RNA polymerase-associated protein RapA 0.65 OHPLBJKB_01108 T-protein low > 74
Escherichia coli ECRC102 0.65 NIAGMN_08650 rapA RNA polymerase-associated protein RapA 0.65 NIAGMN_18990 tyrA bifunctional chorismate mutase/prephenate dehydrogenase low > 80
Escherichia coli BW25113 0.65 b0059 hepA ATP-dependent helicase HepA (NCBI) 0.65 b2600 tyrA fused chorismate mutase T/prephenate dehydrogenase (NCBI) low > 76
Escherichia coli ECOR27 0.65 NOLOHH_03145 rapA RNA polymerase-associated protein RapA 0.65 NOLOHH_12895 tyrA bifunctional chorismate mutase/prephenate dehydrogenase low > 76
Escherichia coli Nissle 1917 0.65 ECOLIN_RS00315 RNA polymerase-associated protein RapA 0.66 ECOLIN_RS14700 bifunctional chorismate mutase/prephenate dehydrogenase low > 55
Escherichia coli BL21 0.65 ECD_00061 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase 0.65 ECD_02489 fused chorismate mutase T/prephenate dehydrogenase low > 61
Escherichia coli ECRC98 0.65 JDDGAC_14395 rapA RNA polymerase-associated protein RapA 0.65 JDDGAC_24885 tyrA bifunctional chorismate mutase/prephenate dehydrogenase low > 87
Escherichia coli ECRC99 0.65 KEDOAH_17355 rapA RNA polymerase-associated protein RapA 0.65 KEDOAH_07000 tyrA bifunctional chorismate mutase/prephenate dehydrogenase — —
Escherichia coli ECRC101 0.65 MCAODC_01315 rapA RNA polymerase-associated protein RapA 0.65 MCAODC_11750 tyrA bifunctional chorismate mutase/prephenate dehydrogenase low > 87
Escherichia coli ECRC100 0.65 OKFHMN_10800 rapA RNA polymerase-associated protein RapA 0.65 OKFHMN_21220 tyrA bifunctional chorismate mutase/prephenate dehydrogenase low > 79
Enterobacter sp. TBS_079 0.65 MPMX20_00753 RNA polymerase-associated protein RapA 0.65 MPMX20_03468 T-protein low > 85
Escherichia coli ECRC62 0.65 BNILDI_08460 rapA RNA polymerase-associated protein RapA 0.65 BNILDI_11700 tyrA bifunctional chorismate mutase/prephenate dehydrogenase low > 75
Klebsiella michiganensis M5al 0.65 BWI76_RS04570 RNA polymerase-associated protein RapA 0.66 BWI76_RS21475 bifunctional chorismate mutase/prephenate dehydrogenase low > 92
Dickeya dianthicola 67-19 0.65 HGI48_RS18170 RNA polymerase-associated protein RapA 0.65 HGI48_RS16255 bifunctional chorismate mutase/prephenate dehydrogenase — —
Enterobacter asburiae PDN3 0.65 EX28DRAFT_3651 Superfamily II DNA/RNA helicases, SNF2 family 0.65 EX28DRAFT_2701 chorismate mutase (EC 5.4.99.5) low > 76
Klebsiella pneumoniae MKP103 0.65 KDGMDA_12795 RNA polymerase-associated protein RapA 0.65 KDGMDA_02170 bifunctional chorismate mutase/prephenate dehydrogenase low > 95
Escherichia coli ECOR38 0.64 HEPCGN_08790 rapA RNA polymerase-associated protein RapA 0.65 HEPCGN_20340 tyrA bifunctional chorismate mutase/prephenate dehydrogenase low > 88
Escherichia fergusonii Becca 0.64 EFB2_03986 RNA polymerase-associated protein RapA 0.66 EFB2_01292 T-protein low > 86
Dickeya dianthicola ME23 0.64 DZA65_RS19310 RNA polymerase-associated protein RapA 0.66 DZA65_RS17350 bifunctional chorismate mutase/prephenate dehydrogenase — —
Pantoea agglomerans CFBP13505 P0401 0.64 PagCFBP13505_RS12940 RNA polymerase-associated protein RapA 0.66 PagCFBP13505_RS16560 T-protein — —
Pantoea sp. MT58 0.64 IAI47_16055 RNA polymerase-associated protein RapA 0.66 IAI47_04405 bifunctional chorismate mutase/prephenate dehydrogenase — —
Pectobacterium carotovorum WPP14 0.64 HER17_RS02990 RNA polymerase-associated protein RapA 0.67 HER17_RS05380 bifunctional chorismate mutase/prephenate dehydrogenase low > 75
Erwinia amylovora T8 0.63 OLJFJH_01340 RNA polymerase-associated protein RapA 0.66 OLJFJH_09705 bifunctional chorismate mutase/prephenate dehydrogenase — —
Erwinia tracheiphila HP pepo 2.2 0.62 IJEDHG_06075 RNA polymerase-associated protein RapA 0.64 IJEDHG_01265 tyrA bifunctional chorismate mutase/prephenate dehydrogenase low > 61
Erwinia tracheiphila SCR3 0.62 LU632_RS02805 rapA RNA polymerase-associated protein RapA 0.64 LU632_RS15445 tyrA bifunctional chorismate mutase/prephenate dehydrogenase low > 73
Shewanella sp. ANA-3 0.61 Shewana3_0574 ATP-dependent helicase HepA (RefSeq) 0.57 Shewana3_3012 tyrA bifunctional chorismate mutase/prephenate dehydrogenase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.61 SO0575 hepA RNA polymerase-associated protein HepA (NCBI ptt file) 0.57 SO1362 tyrA chorismate mutase/prephenate dehydrogenase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.60 Sama_3131 ATP-dependent helicase HepA (RefSeq) 0.61 Sama_0894 tyrA bifunctional chorismate mutase/prephenate dehydrogenase (RefSeq) low > 62
Shewanella loihica PV-4 0.60 Shew_0457 ATP-dependent helicase HepA (RefSeq) 0.57 Shew_1068 tyrA bifunctional chorismate mutase/prephenate dehydrogenase (RefSeq) — —
Alteromonas macleodii MIT1002 0.44 MIT1002_00659 RNA polymerase-associated protein RapA 0.56 MIT1002_01315 T-protein — —

Not shown: 31 genomes with orthologs for CSW01_12705 only; 0 genomes with orthologs for CSW01_03640 only