| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_07530 | | ABC transporter ATP-binding protein | 1.0 | CSW01_02835 | | RNA polymerase sigma factor RpoS | 0.72 | 10 |
| Marinobacter adhaerens HP15 | 0.50 | HP15_3438 | | lipid A export ATP-binding/permease protein msbA | 0.62 | HP15_1283 | | RNA polymerase, sigma 70 subunit, RpoD family | low | > 73 |
| Pseudomonas fluorescens FW300-N2E2 | 0.49 | Pf6N2E2_2531 | | Lipid A export ATP-binding/permease protein MsbA | 0.62 | Pf6N2E2_3037 | | RNA polymerase sigma factor RpoS | low | > 103 |
| Pseudomonas sp. SVBP6 | 0.49 | COO64_RS06795 | | ABC transporter ATP-binding protein | 0.63 | COO64_RS19795 | rpoS | RNA polymerase sigma factor RpoS | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.49 | AO353_02125 | | ABC transporter ATP-binding protein | 0.63 | AO353_16615 | | RNA polymerase sigma factor RpoS | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.49 | AO356_03520 | | ABC transporter ATP-binding protein | 0.62 | AO356_05885 | | RNA polymerase sigma factor RpoS | low | > 104 |
| Pseudomonas sp. S08-1 | 0.49 | OH686_21045 | | Efflux ABC transporter, permease/ATP-binding protein | 0.62 | OH686_18185 | | RNA polymerase sigma factor RpoS | low | > 80 |
| Pseudomonas putida KT2440 | 0.49 | PP_1760 | | ABC transporter, ATP-binding protein | 0.63 | PP_1623 | | RNA polymerase, sigma S (sigma 38) factor | low | > 96 |
| Pseudomonas sp. BP01 | 0.49 | JOY50_RS16185 | | ABC transporter ATP-binding protein | 0.63 | JOY50_RS23755 | rpoS | RNA polymerase sigma factor RpoS | low | > 84 |
| Pseudomonas lactucae CFBP13502 | 0.49 | GEMAOFIL_04057 | | Multidrug resistance ABC transporter ATP-binding/permease protein BmrA | 0.62 | GEMAOFIL_01443 | | RNA polymerase sigma factor RpoS | low | > 93 |
| Pseudomonas segetis P6 | 0.49 | MPMX49_02857 | | Multidrug resistance ABC transporter ATP-binding/permease protein BmrA | 0.62 | MPMX49_03428 | | RNA polymerase sigma factor RpoS | low | > 75 |
| Pseudomonas sp. RS175 | 0.48 | PFR28_00894 | | Multidrug resistance ABC transporter ATP-binding/permease protein BmrA | 0.62 | PFR28_00427 | | RNA polymerase sigma factor RpoS | low | > 88 |
| Pseudomonas simiae WCS417 | 0.48 | PS417_19150 | | ABC transporter ATP-binding protein | 0.62 | PS417_06365 | | RNA polymerase sigma factor | low | > 88 |
| Pseudomonas sp. DMC3 | 0.48 | GFF4688 | | Multidrug resistance ABC transporter ATP-binding/permease protein BmrA | 0.62 | GFF2084 | | RNA polymerase sigma factor RpoS | low | > 89 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.48 | Psyr_3656 | | ABC transporter, transmembrane region:ABC transporter | 0.62 | Psyr_1374 | | RNA polymerase, sigma 38 subunit, RpoS | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.48 | Psyr_3656 | | ABC transporter, transmembrane region:ABC transporter | 0.62 | Psyr_1374 | | RNA polymerase, sigma 38 subunit, RpoS | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.48 | Pf1N1B4_362 | | Lipid A export ATP-binding/permease protein MsbA | 0.62 | Pf1N1B4_3115 | | RNA polymerase sigma factor RpoS | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.48 | PFLU_RS21145 | | ABC transporter ATP-binding protein | 0.62 | PFLU_RS06430 | | RNA polymerase sigma factor RpoS | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.48 | PFLU_RS21145 | | ABC transporter ATP-binding protein | 0.62 | PFLU_RS06430 | | RNA polymerase sigma factor RpoS | low | > 109 |
| Pseudomonas stutzeri RCH2 | 0.47 | Psest_2677 | | ABC-type multidrug transport system, ATPase and permease components | 0.61 | Psest_2806 | | RNA polymerase sigma factor RpoS | low | > 67 |
| Pseudomonas aeruginosa PA14 | 0.47 | IKLFDK_03800 | | ABC transporter ATP-binding protein | 0.62 | IKLFDK_18495 | | RNA polymerase sigma factor RpoS | low | > 100 |
| Pseudomonas fluorescens GW456-L13 | 0.47 | PfGW456L13_2165 | | Lipid A export ATP-binding/permease protein MsbA | 0.62 | PfGW456L13_4674 | | RNA polymerase sigma factor RpoS | low | > 87 |
Not shown: 1 genomes with orthologs for CSW01_07530 only; 38 genomes with orthologs for CSW01_02835 only