Conservation of cofitness between CSW01_02100 and CSW01_02450 in Vibrio cholerae E7946 ATCC 55056

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02100 RNase E specificity factor CsrD 1.0 CSW01_02450 pyrroline-5-carboxylate reductase 0.76 18
Serratia liquefaciens MT49 0.29 IAI46_22725 RNase E specificity factor CsrD 0.69 IAI46_21415 pyrroline-5-carboxylate reductase low > 86
Dickeya dianthicola ME23 0.26 DZA65_RS01405 RNase E specificity factor CsrD 0.67 DZA65_RS18440 pyrroline-5-carboxylate reductase — —
Dickeya dianthicola 67-19 0.26 HGI48_RS01345 RNase E specificity factor CsrD 0.68 HGI48_RS17350 pyrroline-5-carboxylate reductase — —
Rahnella sp. WP5 0.26 EX31_RS12230 RNase E specificity factor CsrD 0.65 EX31_RS02690 pyrroline-5-carboxylate reductase low > 89
Enterobacter asburiae PDN3 0.26 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain 0.27 EX28DRAFT_2585 pyrroline-5-carboxylate reductase 0.58 66
Escherichia coli ECOR38 0.25 HEPCGN_16585 csrD RNase E specificity factor CsrD 0.27 HEPCGN_07250 proC pyrroline-5-carboxylate reductase low > 87
Dickeya dadantii 3937 0.25 DDA3937_RS01425 RNase E specificity factor CsrD 0.68 DDA3937_RS17305 pyrroline-5-carboxylate reductase low > 74
Escherichia coli ECRC101 0.25 MCAODC_08240 csrD RNase E specificity factor CsrD 0.27 MCAODC_27835 proC pyrroline-5-carboxylate reductase low > 87
Escherichia coli ECRC62 0.25 BNILDI_02015 csrD RNase E specificity factor CsrD 0.27 BNILDI_22950 proC pyrroline-5-carboxylate reductase low > 75
Escherichia coli ECRC100 0.25 OKFHMN_17720 csrD RNase E specificity factor CsrD 0.27 OKFHMN_08610 proC pyrroline-5-carboxylate reductase low > 80
Escherichia coli Nissle 1917 0.25 ECOLIN_RS18635 RNase E specificity factor CsrD 0.27 ECOLIN_RS02345 pyrroline-5-carboxylate reductase low > 55
Escherichia coli ECRC102 0.25 NIAGMN_15480 csrD RNase E specificity factor CsrD 0.27 NIAGMN_06665 proC pyrroline-5-carboxylate reductase — —
Escherichia coli ECRC98 0.25 JDDGAC_21345 csrD RNase E specificity factor CsrD 0.27 JDDGAC_12265 proC pyrroline-5-carboxylate reductase low > 86
Escherichia coli ECRC99 0.25 KEDOAH_10430 csrD RNase E specificity factor CsrD 0.27 KEDOAH_19355 proC pyrroline-5-carboxylate reductase — —
Escherichia coli ECOR27 0.25 NOLOHH_09505 csrD RNase E specificity factor CsrD 0.27 NOLOHH_01535 proC pyrroline-5-carboxylate reductase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.25 OHPLBJKB_00453 RNase E specificity factor CsrD 0.27 OHPLBJKB_03288 Pyrroline-5-carboxylate reductase low > 73
Escherichia coli BL21 0.25 ECD_03111 targeting factor for csrBC sRNA degradation 0.27 ECD_00333 pyrroline-5-carboxylate reductase, NAD(P)-binding low > 61
Escherichia fergusonii Becca 0.25 EFB2_00579 RNase E specificity factor CsrD 0.27 EFB2_03670 Pyrroline-5-carboxylate reductase low > 86
Escherichia coli BW25113 0.25 b3252 yhdA conserved inner membrane protein (NCBI) 0.27 b0386 proC pyrroline-5-carboxylate reductase (NCBI) 0.50 42
Enterobacter sp. TBS_079 0.25 MPMX20_04158 RNase E specificity factor CsrD 0.27 MPMX20_00976 Pyrroline-5-carboxylate reductase low > 85
Pectobacterium carotovorum WPP14 0.25 HER17_RS20175 RNase E specificity factor CsrD 0.69 HER17_RS03805 pyrroline-5-carboxylate reductase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF2133 RNase E specificity factor CsrD 0.26 GFF4283 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) low > 78
Klebsiella michiganensis M5al 0.24 BWI76_RS25505 RNase E specificity factor CsrD 0.27 BWI76_RS06170 pyrroline-5-carboxylate reductase — —
Erwinia tracheiphila SCR3 0.24 LU632_RS21455 csrD RNase E specificity factor CsrD 0.23 LU632_RS18995 proC pyrroline-5-carboxylate reductase low > 74
Erwinia amylovora T8 0.22 OLJFJH_06905 RNase E specificity factor CsrD 0.26 OLJFJH_18285 pyrroline-5-carboxylate reductase — —
Pantoea sp. MT58 0.22 IAI47_02430 RNase E specificity factor CsrD 0.26 IAI47_14945 pyrroline-5-carboxylate reductase low > 76
Shewanella oneidensis MR-1 0.22 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) 0.57 SO3354 proC pyrroline-5-carboxylate reductase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.21 Shewana3_3668 regulatory protein CsrD (RefSeq) 0.56 Shewana3_1193 pyrroline-5-carboxylate reductase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.21 Sama_0449 regulatory protein CsrD (RefSeq) 0.50 Sama_2478 pyrroline-5-carboxylate reductase (RefSeq) low > 62
Shewanella loihica PV-4 0.19 Shew_0384 regulatory protein CsrD (RefSeq) 0.52 Shew_1136 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) low > 60

Not shown: 0 genomes with orthologs for CSW01_02100 only; 80 genomes with orthologs for CSW01_02450 only