Conservation of cofitness between CSW01_04590 and CSW01_02100 in Vibrio cholerae E7946 ATCC 55056

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04590 transcriptional regulator GcvA 1.0 CSW01_02100 RNase E specificity factor CsrD 0.57 12
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF4865 Glycine cleavage system transcriptional activator GcvA 0.24 GFF2133 RNase E specificity factor CsrD low > 78
Rahnella sp. WP5 0.72 EX31_RS13110 transcriptional regulator GcvA 0.26 EX31_RS12230 RNase E specificity factor CsrD low > 89
Serratia liquefaciens MT49 0.72 IAI46_20340 transcriptional regulator GcvA 0.29 IAI46_22725 RNase E specificity factor CsrD low > 87
Erwinia amylovora T8 0.72 OLJFJH_09170 Glycine cleavage system transcriptional activator 0.22 OLJFJH_06905 RNase E specificity factor CsrD low > 58
Shewanella amazonensis SB2B 0.72 Sama_2429 DNA-binding transcriptional activator GcvA (RefSeq) 0.21 Sama_0449 regulatory protein CsrD (RefSeq) 0.51 4
Escherichia coli ECRC98 0.72 JDDGAC_23785 gcvA glycine cleavage system transcriptional regulator GcvA 0.25 JDDGAC_21345 csrD RNase E specificity factor CsrD low > 87
Escherichia coli ECOR27 0.72 NOLOHH_12000 gcvA glycine cleavage system transcriptional regulator GcvA 0.25 NOLOHH_09505 csrD RNase E specificity factor CsrD low > 76
Escherichia coli ECRC100 0.72 OKFHMN_20120 gcvA glycine cleavage system transcriptional regulator GcvA 0.25 OKFHMN_17720 csrD RNase E specificity factor CsrD low > 79
Escherichia coli BW25113 0.72 b2808 gcvA DNA-binding transcriptional dual regulator (NCBI) 0.25 b3252 yhdA conserved inner membrane protein (NCBI) low > 76
Escherichia coli Nissle 1917 0.72 ECOLIN_RS15650 glycine cleavage system transcriptional regulator GcvA 0.25 ECOLIN_RS18635 RNase E specificity factor CsrD low > 55
Escherichia fergusonii Becca 0.72 EFB2_01109 Glycine cleavage system transcriptional activator 0.25 EFB2_00579 RNase E specificity factor CsrD low > 86
Escherichia coli ECRC62 0.72 BNILDI_10505 gcvA glycine cleavage system transcriptional regulator GcvA 0.25 BNILDI_02015 csrD RNase E specificity factor CsrD low > 75
Escherichia coli ECRC99 0.72 KEDOAH_08010 gcvA glycine cleavage system transcriptional regulator GcvA 0.25 KEDOAH_10430 csrD RNase E specificity factor CsrD — —
Escherichia coli BL21 0.72 ECD_02659 glycine cleavage system transcriptional activator; autorepressor 0.25 ECD_03111 targeting factor for csrBC sRNA degradation low > 61
Escherichia coli ECRC101 0.72 MCAODC_10645 gcvA glycine cleavage system transcriptional regulator GcvA 0.25 MCAODC_08240 csrD RNase E specificity factor CsrD low > 87
Escherichia coli ECRC102 0.72 NIAGMN_17890 gcvA glycine cleavage system transcriptional regulator GcvA 0.25 NIAGMN_15480 csrD RNase E specificity factor CsrD low > 80
Escherichia coli ECOR38 0.72 HEPCGN_19375 gcvA glycine cleavage system transcriptional regulator GcvA 0.25 HEPCGN_16585 csrD RNase E specificity factor CsrD low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_00923 Glycine cleavage system transcriptional activator 0.25 OHPLBJKB_00453 RNase E specificity factor CsrD low > 74
Enterobacter sp. TBS_079 0.71 MPMX20_03671 Glycine cleavage system transcriptional activator 0.25 MPMX20_04158 RNase E specificity factor CsrD low > 85
Erwinia tracheiphila HP pepo 2.2 0.71 IJEDHG_17275 gcvA Glycine cleavage system transcriptional activator 0.24 IJEDHG_13555 csrD RNase E specificity factor CsrD low > 61
Erwinia tracheiphila SCR3 0.71 LU632_RS06255 transcriptional regulator GcvA 0.24 LU632_RS21455 csrD RNase E specificity factor CsrD low > 73
Pantoea agglomerans CFBP13505 P0401 0.71 PagCFBP13505_RS16945 transcriptional regulator GcvA 0.22 PagCFBP13505_RS11025 RNase E specificity factor CsrD low > 74
Pantoea sp. MT58 0.71 IAI47_04025 transcriptional regulator GcvA 0.22 IAI47_02430 RNase E specificity factor CsrD low > 76
Klebsiella michiganensis M5al 0.71 BWI76_RS22955 transcriptional regulator GcvA 0.24 BWI76_RS25505 RNase E specificity factor CsrD low > 92
Dickeya dadantii 3937 0.71 DDA3937_RS05050 transcriptional regulator GcvA 0.25 DDA3937_RS01425 RNase E specificity factor CsrD 0.61 11
Enterobacter asburiae PDN3 0.71 EX28DRAFT_2883 Transcriptional regulator 0.26 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain low > 76
Dickeya dianthicola ME23 0.71 DZA65_RS05390 transcriptional regulator GcvA 0.26 DZA65_RS01405 RNase E specificity factor CsrD low > 75
Dickeya dianthicola 67-19 0.71 HGI48_RS05050 transcriptional regulator GcvA 0.26 HGI48_RS01345 RNase E specificity factor CsrD low > 71
Shewanella sp. ANA-3 0.71 Shewana3_2894 DNA-binding transcriptional activator GcvA (RefSeq) 0.21 Shewana3_3668 regulatory protein CsrD (RefSeq) — —
Shewanella loihica PV-4 0.71 Shew_2764 DNA-binding transcriptional activator GcvA (RefSeq) 0.19 Shew_0384 regulatory protein CsrD (RefSeq) — —
Pectobacterium carotovorum WPP14 0.71 HER17_RS16415 transcriptional regulator GcvA 0.25 HER17_RS20175 RNase E specificity factor CsrD low > 75
Shewanella oneidensis MR-1 0.70 SO1533 glycine cleavage system transcriptional activator, putative (NCBI ptt file) 0.22 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) 0.44 27
Klebsiella pneumoniae MKP103 0.63 KDGMDA_03515 Glycine cleavage system transcriptional activator 0.23 KDGMDA_06280 Lipoprotein low > 95

Not shown: 70 genomes with orthologs for CSW01_04590 only; 0 genomes with orthologs for CSW01_02100 only