Conservation of cofitness between CSW01_00235 and CSW01_01735 in Vibrio cholerae E7946 ATCC 55056

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00235 peptide deformylase 1.0 CSW01_01735 peptidase M23 0.60 4
Serratia liquefaciens MT49 0.77 IAI46_23265 peptide deformylase 0.27 IAI46_24715 murein hydrolase activator EnvC low > 87
Rahnella sp. WP5 0.76 EX31_RS15975 peptide deformylase 0.27 EX31_RS14365 murein hydrolase activator EnvC low > 89
Erwinia amylovora T8 0.75 OLJFJH_03710 peptide deformylase 0.25 OLJFJH_05895 murein hydrolase activator EnvC low > 58
Klebsiella michiganensis M5al 0.75 BWI76_RS25670 peptide deformylase 0.27 BWI76_RS27235 murein hydrolase activator EnvC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF2392 Peptide deformylase (EC 3.5.1.88) 0.28 GFF397 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP — —
Erwinia tracheiphila SCR3 0.74 LU632_RS22470 def peptide deformylase 0.26 LU632_RS21895 envC murein hydrolase activator EnvC — —
Pantoea agglomerans CFBP13505 P0401 0.74 PagCFBP13505_RS22535 peptide deformylase 0.25 PagCFBP13505_RS18625 murein hydrolase activator EnvC — —
Erwinia tracheiphila HP pepo 2.2 0.74 IJEDHG_12480 def peptide deformylase 0.26 IJEDHG_07900 envC murein hydrolase activator EnvC — —
Pantoea sp. MT58 0.74 IAI47_02290 peptide deformylase 0.26 IAI47_00720 murein hydrolase activator EnvC — —
Escherichia fergusonii Becca 0.73 EFB2_00537 Peptide deformylase 0.28 EFB2_00197 Murein hydrolase activator EnvC — —
Escherichia coli BL21 0.73 ECD_03137 peptide deformylase 0.27 ECD_03471 activator of AmiB,C murein hydrolases, septal ring factor — —
Escherichia coli ECRC99 0.73 KEDOAH_10610 def peptide deformylase 0.28 KEDOAH_12420 envC murein hydrolase activator EnvC — —
Escherichia coli ECRC62 0.73 BNILDI_02190 def peptide deformylase 0.28 BNILDI_03905 envC murein hydrolase activator EnvC — —
Escherichia coli ECRC101 0.73 MCAODC_08060 def peptide deformylase 0.28 MCAODC_06240 envC murein hydrolase activator EnvC — —
Dickeya dadantii 3937 0.73 DDA3937_RS19125 peptide deformylase 0.29 DDA3937_RS20420 murein hydrolase activator EnvC — —
Escherichia coli Nissle 1917 0.73 ECOLIN_RS18865 peptide deformylase 0.28 ECOLIN_RS20620 murein hydrolase activator EnvC — —
Escherichia coli ECOR27 0.73 NOLOHH_09330 def peptide deformylase 0.28 NOLOHH_07610 envC murein hydrolase activator EnvC — —
Escherichia coli BW25113 0.73 b3287 def peptide deformylase (NCBI) 0.28 b3613 yibP putative membrane protein (VIMSS) — —
Escherichia coli ECRC102 0.73 NIAGMN_15300 def peptide deformylase 0.28 NIAGMN_13490 envC murein hydrolase activator EnvC — —
Escherichia coli ECRC100 0.73 OKFHMN_17530 def peptide deformylase 0.28 OKFHMN_15730 envC murein hydrolase activator EnvC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_00417 Peptide deformylase 0.28 OHPLBJKB_00086 Murein hydrolase activator EnvC — —
Escherichia coli ECRC98 0.73 JDDGAC_21160 def peptide deformylase 0.28 JDDGAC_19355 envC murein hydrolase activator EnvC — —
Escherichia coli ECOR38 0.73 HEPCGN_16360 def peptide deformylase 0.28 HEPCGN_14570 envC murein hydrolase activator EnvC — —
Dickeya dianthicola ME23 0.73 DZA65_RS20340 peptide deformylase 0.29 DZA65_RS00835 murein hydrolase activator EnvC — —
Pectobacterium carotovorum WPP14 0.73 HER17_RS02225 peptide deformylase 0.29 HER17_RS20750 murein hydrolase activator EnvC low > 75
Dickeya dianthicola 67-19 0.73 HGI48_RS19215 peptide deformylase 0.29 HGI48_RS00780 murein hydrolase activator EnvC — —
Enterobacter asburiae PDN3 0.72 EX28DRAFT_0041 peptide deformylase 0.28 EX28DRAFT_3864 Membrane-bound metallopeptidase — —
Enterobacter sp. TBS_079 0.72 MPMX20_04194 Peptide deformylase 0.28 MPMX20_00120 Murein hydrolase activator EnvC low > 85
Klebsiella pneumoniae MKP103 0.71 KDGMDA_06540 peptide deformylase 0.26 KDGMDA_07920 murein hydrolase activator EnvC 0.23 66
Alteromonas macleodii MIT1002 0.65 MIT1002_00020 Peptide deformylase 1 0.27 MIT1002_00489 Septal ring factor — —
Shewanella amazonensis SB2B 0.65 Sama_0043 def peptide deformylase (RefSeq) 0.29 Sama_0059 M24/M37 family peptidase (RefSeq) — —
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_0398 peptide deformylase 0.22 B158DRAFT_0705 Membrane-bound metallopeptidase low > 40
Shewanella sp. ANA-3 0.63 Shewana3_0035 def peptide deformylase (RefSeq) 0.28 Shewana3_0050 peptidase M23B (RefSeq) low > 73
Shewanella loihica PV-4 0.63 Shew_3736 peptide deformylase (RefSeq) 0.29 Shew_3807 peptidase M23B (RefSeq) — —
Shewanella oneidensis MR-1 0.62 SO0032 def-1 polypeptide deformylase (NCBI ptt file) 0.26 SO0048 peptidase, M23/M37 family (NCBI ptt file) low > 76
Lysobacter sp. OAE881 0.60 ABIE51_RS02245 peptide deformylase 0.20 ABIE51_RS19260 peptidoglycan DD-metalloendopeptidase family protein low > 62
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_4123 Peptide deformylase (EC 3.5.1.88) 0.22 Pf6N2E2_3834 Lipoprotein NlpD — —
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_11285 peptide deformylase 0.22 AO356_09775 peptidase M23 — —
Pseudomonas stutzeri RCH2 0.59 Psest_0023 peptide deformylase 0.19 Psest_0161 Membrane-bound metallopeptidase — —
Pseudomonas sp. DMC3 0.59 GFF592 Peptide deformylase 0.21 GFF4090 Murein hydrolase activator EnvC — —
Pseudomonas fluorescens FW300-N1B4 0.58 Pf1N1B4_1912 Peptide deformylase (EC 3.5.1.88) 0.21 Pf1N1B4_1618 Lipoprotein NlpD — —
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_650 Peptide deformylase (EC 3.5.1.88) 0.20 PfGW456L13_354 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP — —
Pseudomonas sp. RS175 0.58 PFR28_04661 Peptide deformylase 0.22 PFR28_04937 Murein hydrolase activator EnvC — —
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_10640 peptide deformylase 0.22 AO353_12110 peptidase M23 — —
Xanthomonas campestris pv. campestris strain 8004 0.58 Xcc-8004.4743.1 Peptide deformylase (EC 3.5.1.88) 0.17 Xcc-8004.29.1 Cell wall endopeptidase, family M23/M37 low > 74
Pseudomonas sp. SVBP6 0.57 COO64_RS02225 def peptide deformylase 0.20 COO64_RS13290 murein hydrolase activator EnvC — —
Pseudomonas segetis P6 0.57 ACVTMO_RS01355 def peptide deformylase 0.22 ACVTMO_RS21300 murein hydrolase activator EnvC family protein — —
Pseudomonas sp. S08-1 0.56 OH686_12515 peptide deformylase 0.21 OH686_14650 Murein hydrolase activator EnvC — —
Pseudomonas aeruginosa PA14 0.56 IKLFDK_25465 Peptide deformylase 0.20 IKLFDK_27840 peptidase M23 — —
Pseudomonas aeruginosa PUPa3 0.56 DQ20_RS58700 def;go_function=peptide peptide deformylase 0.20 DQ20_RS50605 murein hydrolase activator EnvC — —
Pseudomonas aeruginosa MRSN321 0.56 DY961_RS26295 def;go_function=peptide peptide deformylase 0.20 DY961_RS11495 murein hydrolase activator EnvC — —
Pseudomonas orientalis W4I3 0.55 QF045_RS03030 peptide deformylase 0.22 QF045_RS04670 murein hydrolase activator EnvC — —
Marinobacter adhaerens HP15 0.55 HP15_3744 peptide deformylase 0.22 HP15_3006 peptidase M23B — —
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS00090 peptide deformylase 0.23 PFLU_RS01650 murein hydrolase activator EnvC — —
Pseudomonas putida KT2440 0.55 PP_0068 peptide deformylase 0.20 PP_5057 Peptidase, M23/M37 family — —
Pseudomonas sp. BP01 0.55 JOY50_RS08240 def peptide deformylase 0.20 JOY50_RS09415 murein hydrolase activator EnvC — —
Pseudomonas simiae WCS417 0.55 PS417_00095 peptide deformylase 0.23 PS417_01600 peptidase M23 — —
Pseudomonas lactucae CFBP13502 0.55 GEMAOFIL_00225 Peptide deformylase 0.22 GEMAOFIL_00540 Murein hydrolase activator EnvC — —
Pseudomonas fluorescens SBW25 0.55 PFLU_RS00090 peptide deformylase 0.23 PFLU_RS01650 murein hydrolase activator EnvC low > 109
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS13880 peptide deformylase 0.15 ABZR86_RS13355 peptidoglycan DD-metalloendopeptidase family protein low > 74
Rhodanobacter sp000427505 FW510-R12 0.53 LRK53_RS02915 peptide deformylase 0.14 LRK53_RS03745 peptidoglycan DD-metalloendopeptidase family protein — —
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_13780 Peptide deformylase 2 0.14 OKGIIK_12915 Peptidase M23 — —
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS10135 peptide deformylase 0.14 LRK54_RS10955 peptidoglycan DD-metalloendopeptidase family protein — —
Rhodanobacter denitrificans MT42 0.52 LRK55_RS09775 peptide deformylase 0.14 LRK55_RS10660 peptidoglycan DD-metalloendopeptidase family protein — —
Desulfovibrio vulgaris Hildenborough JW710 0.39 DVU3366 def polypeptide deformylase (TIGR) 0.11 DVU2337 peptidase, M23/M37 family (TIGR) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.35 CA264_18170 peptide deformylase 0.08 CA264_14515 peptidase M23 — —
Bacteroides ovatus ATCC 8483 0.34 BACOVA_01774 putative peptide deformylase 0.09 BACOVA_01841 peptidase, M23 family — —
Fusobacterium nucleatum SB010 0.33 HUW76_05815 peptide deformylase 0.07 HUW76_08065 peptidoglycan DD-metalloendopeptidase family protein — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS18885 peptide deformylase 0.11 ABZR88_RS18275 murein hydrolase activator EnvC — —
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS04280 peptide deformylase 0.09 HMPREF1181_RS02875 peptidoglycan DD-metalloendopeptidase family protein — —

Not shown: 47 genomes with orthologs for CSW01_00235 only; 1 genomes with orthologs for CSW01_01735 only