Conservation of cofitness between CSW01_18780 and CSW01_01285 in Vibrio cholerae E7946 ATCC 55056

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 1.0 CSW01_01285 perosamine synthetase 0.73 13
Shewanella amazonensis SB2B 0.59 Sama_0630 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.27 Sama_2329 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis (RefSeq) low > 62
Shewanella sp. ANA-3 0.59 Shewana3_3309 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.23 Shewana3_1303 polysaccharide biosynthesis protein (RefSeq) low > 73
Shewanella loihica PV-4 0.57 Shew_0801 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.20 Shew_1319 DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq) low > 60
Pantoea sp. MT58 0.55 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.25 IAI47_21625 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 76
Escherichia coli Nissle 1917 0.55 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.22 ECOLIN_RS13125 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 55
Escherichia coli ECRC100 0.55 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.54 OKFHMN_24430 rfbE GDP-perosamine synthase RfbE/PerA low > 80
Escherichia coli ECRC101 0.55 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.54 MCAODC_20510 rfbE GDP-perosamine synthase RfbE/PerA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_02809 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.22 OHPLBJKB_01458 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase low > 73
Escherichia coli ECRC99 0.55 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.54 KEDOAH_03720 rfbE GDP-perosamine synthase RfbE/PerA — —
Escherichia coli ECRC102 0.55 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.54 NIAGMN_22375 rfbE GDP-perosamine synthase RfbE/PerA — —
Escherichia coli ECOR27 0.55 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.23 NOLOHH_14620 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 75
Escherichia fergusonii Becca 0.55 EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.23 EFB2_01603 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase low > 86
Escherichia coli ECOR38 0.55 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.24 HEPCGN_03130 vioA dTDP-4-amino-4,6-dideoxy-D-glucose aminotransferase VioA — —
Erwinia tracheiphila SCR3 0.54 LU632_RS09660 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.24 LU632_RS16495 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 74
Escherichia coli ECRC98 0.54 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.54 JDDGAC_28540 rfbE GDP-perosamine synthase RfbE/PerA low > 86
Escherichia coli BL21 0.54 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent 0.24 ECD_01942 VioA, involved in dTDP-N-acetylviosamine synthesis — —
Escherichia coli ECRC62 0.54 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.22 BNILDI_13535 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 75
Escherichia coli BW25113 0.54 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) 0.22 b2253 arnB uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent (RefSeq) low > 76
Serratia liquefaciens MT49 0.54 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.25 IAI46_11015 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 86
Enterobacter sp. TBS_079 0.53 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.24 MPMX20_04380 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase low > 85
Enterobacter asburiae PDN3 0.53 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB 0.24 EX28DRAFT_4082 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis low > 76
Dickeya dadantii 3937 0.53 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.26 DDA3937_RS21390 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 74
Pectobacterium carotovorum WPP14 0.52 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.24 HER17_RS06520 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 75
Dickeya dianthicola 67-19 0.52 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.26 HGI48_RS21625 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 71
Klebsiella michiganensis M5al 0.52 BWI76_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase 0.23 BWI76_RS26485 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase low > 92
Dickeya dianthicola ME23 0.52 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.25 DZA65_RS22610 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) 0.25 GFF1858 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-) low > 78
Rahnella sp. WP5 0.51 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.24 EX31_RS14020 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 89
Parabacteroides merdae CL09T00C40 0.16 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.26 HMPREF1078_RS01585 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 61
Bacteroides ovatus ATCC 8483 0.15 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA 0.20 BACOVA_03734 DegT/DnrJ/EryC1/StrS aminotransferase family protein low > 94

Not shown: 1 genomes with orthologs for CSW01_18780 only; 61 genomes with orthologs for CSW01_01285 only