Conservation of cofitness between CSW01_00680 and CSW01_00785 in Vibrio cholerae E7946 ATCC 55056

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00680 Cof-type HAD-IIB family hydrolase 1.0 CSW01_00785 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.40 10
Pantoea agglomerans CFBP13505 P0401 0.50 PagCFBP13505_RS15315 sugar/pyridoxal phosphate phosphatase YigL 0.68 PagCFBP13505_RS18390 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 74
Pectobacterium carotovorum WPP14 0.50 HER17_RS01415 sugar/pyridoxal phosphate phosphatase YigL 0.67 HER17_RS00975 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Pantoea sp. MT58 0.50 IAI47_18335 sugar/pyridoxal phosphate phosphatase YigL 0.68 IAI47_00950 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 76
Serratia liquefaciens MT49 0.50 IAI46_00790 sugar/pyridoxal phosphate phosphatase YigL 0.65 IAI46_24455 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 86
Klebsiella pneumoniae MKP103 0.49 KDGMDA_09760 sugar/pyridoxal phosphate phosphatase YigL 0.65 KDGMDA_09400 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 95
Dickeya dadantii 3937 0.49 DDA3937_RS19825 sugar/pyridoxal phosphate phosphatase YigL 0.66 DDA3937_RS00990 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 74
Dickeya dianthicola ME23 0.49 DZA65_RS21025 sugar/pyridoxal phosphate phosphatase YigL 0.66 DZA65_RS21430 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Dickeya dianthicola 67-19 0.49 HGI48_RS19980 sugar/pyridoxal phosphate phosphatase YigL 0.66 HGI48_RS20385 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 71
Rahnella sp. WP5 0.49 EX31_RS15230 sugar/pyridoxal phosphate phosphatase YigL 0.65 EX31_RS14140 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 89
Klebsiella michiganensis M5al 0.49 BWI76_RS01265 sugar/pyridoxal phosphate phosphatase YigL 0.65 BWI76_RS00885 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 92
Escherichia coli ECRC99 0.48 KEDOAH_13810 yigL sugar/pyridoxal phosphate phosphatase YigL 0.65 KEDOAH_14625 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECRC101 0.48 MCAODC_04845 yigL sugar/pyridoxal phosphate phosphatase YigL 0.65 MCAODC_04035 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 88
Escherichia coli ECRC62 0.48 BNILDI_05060 yigL sugar/pyridoxal phosphate phosphatase YigL 0.65 BNILDI_05845 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Escherichia coli BW25113 0.48 b3826 yigL predicted hydrolase (NCBI) 0.65 b3965 trmA tRNA (uracil-5-)-methyltransferase (NCBI) low > 76
Escherichia coli ECRC98 0.48 JDDGAC_17965 yigL sugar/pyridoxal phosphate phosphatase YigL 0.65 JDDGAC_17160 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_04225 Pyridoxal phosphate phosphatase YigL 0.65 OHPLBJKB_04085 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 74
Escherichia coli Nissle 1917 0.48 ECOLIN_RS21965 sugar/pyridoxal phosphate phosphatase YigL 0.65 ECOLIN_RS22900 tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli BL21 0.48 ECD_03705 pyridoxal phosphate phosphatase 0.65 ECD_03850 tRNA m(5)U54 methyltransferase, SAM-dependent; tmRNA m(5)U341 methyltransferase low > 61
Escherichia coli ECOR27 0.48 NOLOHH_06470 yigL sugar/pyridoxal phosphate phosphatase YigL 0.65 NOLOHH_05680 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 76
Escherichia coli ECRC102 0.48 NIAGMN_12095 yigL sugar/pyridoxal phosphate phosphatase YigL 0.65 NIAGMN_11285 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 80
Escherichia coli ECRC100 0.48 OKFHMN_14340 yigL sugar/pyridoxal phosphate phosphatase YigL 0.65 OKFHMN_13535 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 79
Escherichia fergusonii Becca 0.48 EFB2_04811 Pyridoxal phosphate phosphatase YigL 0.65 EFB2_04645 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 86
Escherichia coli ECOR38 0.48 HEPCGN_13040 yigL sugar/pyridoxal phosphate phosphatase YigL 0.65 HEPCGN_12190 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 88
Erwinia tracheiphila HP pepo 2.2 0.48 IJEDHG_08715 yigL sugar/pyridoxal phosphate phosphatase YigL 0.67 IJEDHG_13145 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 61
Erwinia tracheiphila SCR3 0.48 LU632_RS24075 yigL sugar/pyridoxal phosphate phosphatase YigL 0.67 LU632_RS19550 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF252 Cof protein, HD superfamily hydrolase 0.64 GFF2351 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) low > 78
Enterobacter asburiae PDN3 0.47 EX28DRAFT_4491 HAD-superfamily hydrolase, subfamily IIB 0.64 EX28DRAFT_4428 tRNA (uracil(54)-C(5))-methyltransferase low > 76
Enterobacter sp. TBS_079 0.47 MPMX20_04454 Pyridoxal phosphate phosphatase YigL 0.65 MPMX20_04515 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 85
Erwinia amylovora T8 0.46 OLJFJH_06460 sugar/pyridoxal phosphate phosphatase YigL 0.65 OLJFJH_06160 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 58
Pseudomonas sp. DMC3 0.17 GFF3449 Sugar phosphatase YidA 0.48 GFF3938 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 89
Pseudomonas fluorescens SBW25 0.17 PFLU_RS13145 Cof-type HAD-IIB family hydrolase 0.50 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 109
Pseudomonas fluorescens SBW25-INTG 0.17 PFLU_RS13145 Cof-type HAD-IIB family hydrolase 0.50 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 109
Pseudomonas simiae WCS417 0.17 PS417_12455 hydrolase 0.49 PS417_24385 tRNA (uracil-5-)-methyltransferase low > 88
Pseudomonas lactucae CFBP13502 0.17 GEMAOFIL_02738 Pyridoxal phosphate phosphatase YigL 0.49 GEMAOFIL_05030 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 93
Pseudomonas fluorescens FW300-N1B4 0.16 Pf1N1B4_4727 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) 0.48 Pf1N1B4_2754 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) low > 87
Pseudomonas fluorescens FW300-N2C3 0.15 AO356_27845 hydrolase 0.49 AO356_15600 tRNA (uracil-5-)-methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.14 Pf6N2E2_759 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) 0.49 Pf6N2E2_5063 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) low > 103

Not shown: 7 genomes with orthologs for CSW01_00680 only; 20 genomes with orthologs for CSW01_00785 only