Conservation of cofitness between CSW01_04995 and CSW01_00395 in Vibrio cholerae E7946 ATCC 55056

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04995 co-chaperone YbbN 1.0 CSW01_00395 ribosomal RNA small subunit methyltransferase J 0.54 12
Pectobacterium carotovorum WPP14 0.42 HER17_RS15510 co-chaperone YbbN 0.54 HER17_RS21305 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 75
Dickeya dianthicola ME23 0.39 DZA65_RS06345 co-chaperone YbbN 0.50 DZA65_RS00030 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 75
Escherichia coli BL21 0.39 ECD_00443 DnaK co-chaperone, thioredoxin-like protein 0.55 ECD_03346 16S rRNA m(2)G1516 methyltransferase, SAM-dependent low > 61
Escherichia coli BW25113 0.39 b0492 ybbN putative thioredoxin-like protein (VIMSS) 0.55 b3497 yhiQ predicted SAM-dependent methyltransferase (NCBI) low > 76
Escherichia coli ECOR38 0.39 HEPCGN_06615 cnoX chaperedoxin 0.55 HEPCGN_15330 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 88
Serratia liquefaciens MT49 0.39 IAI46_05335 co-chaperone YbbN 0.56 IAI46_24205 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 87
Escherichia fergusonii Becca 0.39 EFB2_03563 Chaperedoxin 0.55 EFB2_00318 Ribosomal RNA small subunit methyltransferase J low > 86
Escherichia coli ECRC100 0.39 OKFHMN_07985 cnoX chaperedoxin 0.55 OKFHMN_16420 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 79
Escherichia coli ECRC99 0.39 KEDOAH_19985 cnoX chaperedoxin 0.55 KEDOAH_11725 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_03182 putative protein YbbN 0.55 OHPLBJKB_00206 Ribosomal RNA small subunit methyltransferase J low > 74
Escherichia coli ECRC102 0.39 NIAGMN_06035 cnoX chaperedoxin 0.55 NIAGMN_14185 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 80
Escherichia coli ECRC101 0.39 MCAODC_27200 cnoX chaperedoxin 0.55 MCAODC_06935 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 87
Escherichia coli ECRC98 0.39 JDDGAC_11630 cnoX chaperedoxin 0.55 JDDGAC_20050 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 87
Escherichia coli ECOR27 0.39 NOLOHH_00975 cnoX chaperedoxin 0.55 NOLOHH_08355 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 76
Escherichia coli Nissle 1917 0.38 ECOLIN_RS02910 chaperedoxin 0.55 ECOLIN_RS19980 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 55
Escherichia coli ECRC62 0.38 BNILDI_22395 cnoX chaperedoxin 0.55 BNILDI_03205 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 75
Dickeya dadantii 3937 0.38 DDA3937_RS05950 co-chaperone YbbN 0.54 DDA3937_RS21270 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF4410 FIG000875: Thioredoxin domain-containing protein EC-YbbN 0.55 GFF518 rRNA small subunit methyltransferase J low > 78
Dickeya dianthicola 67-19 0.38 HGI48_RS06000 co-chaperone YbbN 0.50 HGI48_RS00040 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 71
Pantoea sp. MT58 0.38 IAI47_14380 co-chaperone YbbN 0.52 IAI47_01350 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 76
Klebsiella michiganensis M5al 0.38 BWI76_RS06935 co-chaperone YbbN 0.50 BWI76_RS26605 16S rRNA (guanine(1516)-N(2))-methyltransferase low > 92
Erwinia tracheiphila SCR3 0.38 LU632_RS15275 co-chaperone YbbN 0.53 LU632_RS19465 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 73
Erwinia tracheiphila HP pepo 2.2 0.38 IJEDHG_01050 trxA co-chaperone YbbN 0.53 IJEDHG_12595 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 61
Pantoea agglomerans CFBP13505 P0401 0.37 PagCFBP13505_RS10820 co-chaperone YbbN 0.52 PagCFBP13505_RS17850 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 74
Enterobacter asburiae PDN3 0.36 EX28DRAFT_2467 Thioredoxin domain-containing protein 0.55 EX28DRAFT_4064 Putative SAM-dependent methyltransferase low > 76
Rahnella sp. WP5 0.36 EX31_RS22595 co-chaperone YbbN 0.56 EX31_RS05160 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 89
Klebsiella pneumoniae MKP103 0.36 KDGMDA_14975 co-chaperone YbbN 0.55 KDGMDA_07420 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 95
Enterobacter sp. TBS_079 0.36 MPMX20_01090 Chaperedoxin 0.53 MPMX20_04396 Ribosomal RNA small subunit methyltransferase J low > 85
Erwinia amylovora T8 0.35 OLJFJH_17685 co-chaperone YbbN 0.54 OLJFJH_04525 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 58
Shewanella sp. ANA-3 0.32 Shewana3_2442 thioredoxin domain-containing protein (RefSeq) 0.60 Shewana3_4037 hypothetical protein (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.31 MIT1002_00529 Thioredoxin 0.38 MIT1002_00112 Ribosomal RNA small subunit methyltransferase J low > 70
Shewanella loihica PV-4 0.29 Shew_2231 thioredoxin domain-containing protein (RefSeq) 0.58 Shew_3647 hypothetical protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.28 Sama_1314 putative thioredoxin-like protein (RefSeq) 0.61 Sama_3564 hypothetical protein (RefSeq) low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_4466 Thioredoxin 0.42 Psyr_1325 Protein of unknown function DUF548 low > 86
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_4466 Thioredoxin 0.42 Psyr_1325 Protein of unknown function DUF548 — —
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS26920 thioredoxin 0.38 PFLU_RS06170 ribosomal RNA small subunit methyltransferase J low > 109
Pseudomonas fluorescens SBW25 0.25 PFLU_RS26920 thioredoxin 0.38 PFLU_RS06170 ribosomal RNA small subunit methyltransferase J low > 109
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_4915 FIG000875: Thioredoxin domain-containing protein EC-YbbN 0.38 Pf6N2E2_3094 SAM-dependent methyltransferase (EC 2.1.1.-) low > 103
Pseudomonas lactucae CFBP13502 0.24 GEMAOFIL_05162 Chaperedoxin 0.38 GEMAOFIL_01390 Ribosomal RNA small subunit methyltransferase J low > 96
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_14910 thioredoxin 0.39 AO356_06145 SAM-dependent methyltransferase low > 104
Pseudomonas sp. RS175 0.24 PFR28_03953 Chaperedoxin 0.37 PFR28_00376 Ribosomal RNA small subunit methyltransferase J low > 88
Pseudomonas sp. BP01 0.24 JOY50_RS20145 trxA thioredoxin 0.39 JOY50_RS26070 class I SAM-dependent methyltransferase low > 84
Pseudomonas stutzeri RCH2 0.24 Psest_3559 thioredoxin 0.41 Psest_1563 Protein of unknown function (DUF548). low > 67
Pseudomonas sp. SVBP6 0.24 COO64_RS15910 trxA thioredoxin 0.40 COO64_RS19535 class I SAM-dependent methyltransferase low > 93
Pseudomonas putida KT2440 0.24 PP_0510 Thioredoxin 0.39 PP_1513 Ribosomal RNA small subunit methyltransferase J low > 96
Pseudomonas simiae WCS417 0.24 PS417_25285 thioredoxin 0.38 PS417_06100 SAM-dependent methyltransferase low > 88
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_06735 thioredoxin 0.40 AO353_16350 SAM-dependent methyltransferase low > 101
Pseudomonas orientalis W4I3 0.24 QF045_RS27250 thioredoxin 0.39 QF045_RS08950 class I SAM-dependent methyltransferase low > 93
Pseudomonas fluorescens FW300-N1B4 0.23 Pf1N1B4_2645 FIG000875: Thioredoxin domain-containing protein EC-YbbN 0.40 Pf1N1B4_3060 SAM-dependent methyltransferase (EC 2.1.1.-) — —
Pseudomonas sp. DMC3 0.23 GFF3823 Chaperedoxin 0.38 GFF2031 Ribosomal RNA small subunit methyltransferase J low > 89
Pseudomonas fluorescens GW456-L13 0.23 PfGW456L13_1308 FIG000875: Thioredoxin domain-containing protein EC-YbbN 0.39 PfGW456L13_4733 SAM-dependent methyltransferase (EC 2.1.1.-) low > 87
Pseudomonas sp. S08-1 0.23 OH686_15675 thioredoxin 0.41 OH686_06755 16S rRNA (guanine(1516)-N(2))-methyltransferase low > 80
Pseudomonas segetis P6 0.23 MPMX49_00986 Chaperedoxin 0.41 MPMX49_01631 Ribosomal RNA small subunit methyltransferase J low > 75
Pseudomonas aeruginosa PA14 0.22 IKLFDK_20930 thioredoxin 0.40 IKLFDK_18790 Ribosomal RNA small subunit methyltransferase J low > 98
Pseudomonas aeruginosa PUPa3 0.22 DQ20_RS47880 trxA;go_component=cytoplasm|0005737||IEA;go_function=disulfide thioredoxin 0.40 DQ20_RS42550 class I SAM-dependent methyltransferase low > 101
Pseudomonas aeruginosa MRSN321 0.22 DY961_RS27770 trxA;go_component=cytoplasm|0005737||IEA;go_function=disulfide thioredoxin 0.40 DY961_RS14575 class I SAM-dependent methyltransferase low > 100

Not shown: 26 genomes with orthologs for CSW01_04995 only; 1 genomes with orthologs for CSW01_00395 only