Conservation of cofitness between BT3911 and BT3361 in Bacteroides thetaiotaomicron VPI-5482

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT3911 malate dehydrogenase (NCBI ptt file) 1.0 BT3361 erythronate-4-phosphate dehydrogenase (NCBI ptt file) 0.39 14
Bacteroides ovatus ATCC 8483 0.93 BACOVA_01130 malate dehydrogenase, NAD-dependent 0.84 BACOVA_01953 4-phosphoerythronate dehydrogenase low > 94
Parabacteroides merdae CL09T00C40 0.91 HMPREF1078_RS13680 malate dehydrogenase 0.51 HMPREF1078_RS19150 4-phosphoerythronate dehydrogenase PdxB low > 61
Bacteroides stercoris CC31F 0.91 HMPREF1181_RS06655 malate dehydrogenase 0.76 HMPREF1181_RS02440 4-phosphoerythronate dehydrogenase PdxB — —
Phocaeicola vulgatus CL09T03C04 0.91 HMPREF1058_RS02165 malate dehydrogenase 0.62 HMPREF1058_RS10820 4-phosphoerythronate dehydrogenase PdxB 0.58 37
Phocaeicola dorei CL03T12C01 0.91 ABI39_RS01355 malate dehydrogenase 0.62 ABI39_RS06250 4-phosphoerythronate dehydrogenase PdxB 0.62 11
Pseudomonas putida KT2440 0.36 PP_0654 putative malate dehydrogenase 0.29 PP_2117 Erythronate-4-phosphate dehydrogenase — —
Marinobacter adhaerens HP15 0.23 HP15_2710 L-lactate/malate dehydrogenase 0.29 HP15_2098 erythronate-4-phosphate dehydrogenase — —
Klebsiella michiganensis M5al 0.22 BWI76_RS15220 L-lactate dehydrogenase 0.31 BWI76_RS20390 erythronate-4-phosphate dehydrogenase low > 92
Rahnella sp. WP5 0.18 EX31_RS22840 L-lactate dehydrogenase 0.34 EX31_RS19610 4-phosphoerythronate dehydrogenase PdxB low > 89
Enterobacter asburiae PDN3 0.16 EX28DRAFT_3285 malate dehydrogenase (NAD) (EC 1.1.1.37) 0.31 EX28DRAFT_0284 Phosphoglycerate dehydrogenase and related dehydrogenases low > 76
Enterobacter sp. TBS_079 0.16 MPMX20_04140 Malate dehydrogenase 0.31 MPMX20_03255 Erythronate-4-phosphate dehydrogenase low > 85
Erwinia tracheiphila SCR3 0.16 LU632_RS21365 mdh malate dehydrogenase 0.30 LU632_RS07815 DUF3410 domain-containing protein — —
Shewanella amazonensis SB2B 0.16 Sama_0672 malate dehydrogenase (RefSeq) 0.26 Sama_2153 erythronate-4-phosphate dehydrogenase (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.16 GFF2149 Malate dehydrogenase (EC 1.1.1.37) 0.34 GFF1936 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) low > 78
Pantoea sp. MT58 0.16 IAI47_02520 malate dehydrogenase 0.29 IAI47_06235 4-phosphoerythronate dehydrogenase PdxB low > 76
Escherichia fergusonii Becca 0.16 EFB2_00594 Malate dehydrogenase 0.32 EFB2_01538 Erythronate-4-phosphate dehydrogenase low > 86
Escherichia coli ECRC101 0.16 OKFHMN_17795 mdh malate dehydrogenase 0.32 OKFHMN_22660 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.16 OHPLBJKB_00468 Malate dehydrogenase 0.32 OHPLBJKB_01385 Erythronate-4-phosphate dehydrogenase low > 73
Escherichia coli ECRC98 0.16 JDDGAC_21420 mdh malate dehydrogenase 0.32 JDDGAC_26620 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Escherichia coli ECRC99 0.16 KEDOAH_10355 mdh malate dehydrogenase 0.32 KEDOAH_05535 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Escherichia coli ECRC102 0.16 NIAGMN_15555 mdh malate dehydrogenase 0.32 NIAGMN_20435 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Escherichia coli ECRC62 0.16 BNILDI_01940 mdh malate dehydrogenase 0.31 BNILDI_13215 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Escherichia coli Nissle 1917 0.16 ECOLIN_RS18555 malate dehydrogenase 0.32 ECOLIN_RS13445 4-phosphoerythronate dehydrogenase PdxB low > 52
Escherichia coli BW25113 0.16 b3236 mdh malate dehydrogenase (NCBI) 0.31 b2320 pdxB erythronate-4-phosphate dehydrogenase (NCBI) low > 76
Escherichia coli BL21 0.16 ECD_03096 malate dehydrogenase, NAD(P)-binding 0.32 ECD_02245 erythronate-4-phosphate dehydrogenase low > 60
Escherichia coli ECRC101 0.16 MCAODC_08315 mdh malate dehydrogenase 0.32 MCAODC_13700 pdxB 4-phosphoerythronate dehydrogenase PdxB — —
Escherichia coli ECOR38 0.16 HEPCGN_16660 mdh malate dehydrogenase 0.31 HEPCGN_21865 pdxB 4-phosphoerythronate dehydrogenase PdxB low > 85
Escherichia coli ECOR27 0.16 NOLOHH_09595 mdh malate dehydrogenase 0.31 NOLOHH_14295 pdxB 4-phosphoerythronate dehydrogenase PdxB 0.62 19
Serratia liquefaciens MT49 0.15 IAI46_01825 malate dehydrogenase 0.30 IAI46_17850 4-phosphoerythronate dehydrogenase PdxB low > 86
Dickeya dadantii 3937 0.14 DDA3937_RS02970 malate dehydrogenase 0.33 DDA3937_RS14475 4-phosphoerythronate dehydrogenase PdxB low > 74
Dickeya dianthicola 67-19 0.14 HGI48_RS03135 malate dehydrogenase 0.28 HGI48_RS14445 4-phosphoerythronate dehydrogenase PdxB low > 71
Dickeya dianthicola ME23 0.14 DZA65_RS03130 malate dehydrogenase 0.32 DZA65_RS15380 4-phosphoerythronate dehydrogenase PdxB low > 75
Pectobacterium carotovorum WPP14 0.14 HER17_RS18390 malate dehydrogenase 0.29 HER17_RS06980 4-phosphoerythronate dehydrogenase PdxB 0.64 20
Vibrio cholerae E7946 ATCC 55056 0.14 CSW01_02270 malate dehydrogenase 0.32 CSW01_10525 DUF3410 domain-containing protein — —

Not shown: 25 genomes with orthologs for BT3911 only; 19 genomes with orthologs for BT3361 only