Conservation of cofitness between BT3232 and BT0155 in Bacteroides thetaiotaomicron VPI-5482

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT3232 gluconate 5-dehydrogenase (NCBI ptt file) 1.0 BT0155 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) 0.34 6
Bacteroides stercoris CC31F 0.97 HMPREF1181_RS01625 gluconate 5-dehydrogenase 0.82 HMPREF1181_RS05285 tRNA 2-thiouridine(34) synthase MnmA low > 56
Bacteroides ovatus ATCC 8483 0.97 BACOVA_00141 oxidoreductase, short chain dehydrogenase/reductase family protein 0.90 BACOVA_01282 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase low > 94
Phocaeicola dorei CL03T12C01 0.96 ABI39_RS05980 gluconate 5-dehydrogenase 0.77 ABI39_RS02190 tRNA 2-thiouridine(34) synthase MnmA low > 72
Phocaeicola vulgatus CL09T03C04 0.96 HMPREF1058_RS11050 gluconate 5-dehydrogenase 0.76 HMPREF1058_RS02880 tRNA 2-thiouridine(34) synthase MnmA low > 67
Parabacteroides merdae CL09T00C40 0.83 HMPREF1078_RS17155 gluconate 5-dehydrogenase 0.67 HMPREF1078_RS10900 tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia fergusonii Becca 0.72 EFB2_00894 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase 0.30 EFB2_02842 tRNA-specific 2-thiouridylase MnmA — —
Escherichia coli Nissle 1917 0.72 ECOLIN_RS01525 gluconate 5-dehydrogenase 0.29 ECOLIN_RS06625 tRNA 2-thiouridine(34) synthase MnmA — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.56 Echvi_4005 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 0.26 Echvi_3454 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Klebsiella michiganensis M5al 0.47 BWI76_RS06140 gluconate 5-dehydrogenase 0.29 BWI76_RS11315 tRNA 2-thiouridine(34) synthase MnmA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF954 5-keto-D-gluconate 5-reductase (EC 1.1.1.69) 0.29 GFF3418 tRNA-specific 2-thiouridylase MnmA — —
Escherichia coli BL21 0.44 ECD_04132 5-keto-D-gluconate-5-reductase 0.29 ECD_01131 tRNA(Gln,Lys,Glu) U34 2-thiouridylase — —
Escherichia coli BW25113 0.44 b4266 idnO gluconate 5-dehydrogenase (NCBI) 0.29 b1133 ycfB orf, hypothetical protein (VIMSS) — —
Escherichia coli ECOR27 0.44 NOLOHH_04025 idnO gluconate 5-dehydrogenase 0.29 NOLOHH_20900 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_03770 5-keto-D-gluconate 5-reductase 0.29 OHPLBJKB_02535 tRNA-specific 2-thiouridylase MnmA — —
Escherichia coli ECOR38 0.44 HEPCGN_09950 idnO gluconate 5-dehydrogenase 0.29 HEPCGN_24220 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Serratia liquefaciens MT49 0.43 IAI46_17585 gluconate 5-dehydrogenase 0.31 IAI46_10440 tRNA 2-thiouridine(34) synthase MnmA — —
Dickeya dianthicola 67-19 0.42 HGI48_RS08240 SDR family oxidoreductase 0.32 HGI48_RS11530 tRNA 2-thiouridine(34) synthase MnmA low > 71
Variovorax sp. OAS795 0.41 ABID97_RS01190 SDR family oxidoreductase 0.28 ABID97_RS04415 tRNA 2-thiouridine(34) synthase MnmA — —
Pectobacterium carotovorum WPP14 0.40 HER17_RS19950 SDR family oxidoreductase 0.31 HER17_RS11625 tRNA 2-thiouridine(34) synthase MnmA — —
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS20310 SDR family oxidoreductase 0.28 QEN71_RS26740 tRNA 2-thiouridine(34) synthase MnmA — —
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS05480 gluconate 5-dehydrogenase 0.26 HSERO_RS03470 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS10990 gluconate 5-dehydrogenase 0.27 BPHYT_RS03360 tRNA-specific 2-thiouridylase MnmA — —
Variovorax sp. SCN45 0.36 GFF5777 5-keto-D-gluconate 5-reductase (EC 1.1.1.69) 0.30 GFF4912 tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) — —
Escherichia coli ECRC62 0.33 BNILDI_10690 ygcW Uncharacterized oxidoreductase YgcW 0.29 BNILDI_19065 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECRC99 0.33 KEDOAH_07815 ygcW Uncharacterized oxidoreductase YgcW 0.29 KEDOAH_24830 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECRC102 0.33 NIAGMN_18085 ygcW Uncharacterized oxidoreductase YgcW 0.29 NIAGMN_24890 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECRC101 0.33 MCAODC_10840 ygcW Uncharacterized oxidoreductase YgcW 0.29 MCAODC_22340 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECRC101 0.33 OKFHMN_20315 ygcW Uncharacterized oxidoreductase YgcW 0.29 OKFHMN_00745 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Escherichia coli ECRC98 0.33 JDDGAC_23980 ygcW Uncharacterized oxidoreductase YgcW 0.29 JDDGAC_06620 mnmA tRNA 2-thiouridine(34) synthase MnmA — —
Enterobacter sp. TBS_079 0.32 MPMX20_01886 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase 0.30 MPMX20_01817 tRNA-specific 2-thiouridylase MnmA — —
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_01159 2-deoxy-D-gluconate 3-dehydrogenase 0.28 H281DRAFT_04651 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase — —
Paraburkholderia graminis OAS925 0.29 ABIE53_002285 2-deoxy-D-gluconate 3-dehydrogenase 0.28 ABIE53_000810 tRNA-specific 2-thiouridylase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF1358 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) 0.29 GFF2600 tRNA-specific 2-thiouridylase MnmA — —
Castellaniella sp019104865 MT123 0.24 ABCV34_RS01165 3-hydroxybutyrate dehydrogenase 0.27 ABCV34_RS06800 tRNA 2-thiouridine(34) synthase MnmA — —

Not shown: 16 genomes with orthologs for BT3232 only; 28 genomes with orthologs for BT0155 only