Conservation of cofitness between b1479 and b3403 in Escherichia coli BW25113

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b1479 sfcA NAD-linked malate dehydrogenase (malic enzyme) (VIMSS) 1.0 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) 0.22 16
Escherichia coli BL21 1.00 ECD_01437 malate dehydrogenase, decarboxylating, NAD-requiring; malic enzyme 1.00 ECD_03255 phosphoenolpyruvate carboxykinase [ATP] — —
Escherichia coli ECRC62 1.00 BNILDI_17520 maeA malate dehydrogenase 1.00 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli ECOR27 1.00 NOLOHH_19035 maeA malate dehydrogenase 1.00 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02238 NAD-dependent malic enzyme 1.00 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) low > 73
Escherichia coli ECOR38 1.00 HEPCGN_26435 maeA malate dehydrogenase 1.00 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) low > 85
Escherichia fergusonii Becca 1.00 EFB2_02512 NAD-dependent malic enzyme 1.00 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS08525 malate dehydrogenase 1.00 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli ECRC99 0.99 KEDOAH_27080 maeA malate dehydrogenase 1.00 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli ECRC102 0.99 NIAGMN_25490 maeA malate dehydrogenase 1.00 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli ECRC101 0.99 MCAODC_16580 maeA malate dehydrogenase 1.00 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli ECRC98 0.99 JDDGAC_03850 maeA malate dehydrogenase 1.00 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli ECRC101 0.99 OKFHMN_01360 maeA malate dehydrogenase 1.00 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF2556 NAD-dependent malic enzyme (EC 1.1.1.38) 0.94 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 78
Enterobacter asburiae PDN3 0.91 EX28DRAFT_1103 Malic enzyme 0.92 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) low > 76
Enterobacter sp. TBS_079 0.91 MPMX20_02369 NAD-dependent malic enzyme 0.92 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) low > 85
Klebsiella michiganensis M5al 0.86 BWI76_RS13830 NAD-dependent malic enzyme 0.93 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) low > 92
Pectobacterium carotovorum WPP14 0.77 HER17_RS13490 NAD-dependent malic enzyme 0.88 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) low > 75
Pantoea sp. MT58 0.77 IAI47_06755 NAD-dependent malic enzyme 0.81 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) low > 76
Erwinia tracheiphila SCR3 0.76 LU632_RS08550 NAD-dependent malic enzyme 0.82 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) low > 74
Serratia liquefaciens MT49 0.75 IAI46_07935 NAD-dependent malic enzyme 0.88 IAI46_23770 phosphoenolpyruvate carboxykinase (ATP) low > 86
Dickeya dianthicola ME23 0.75 DZA65_RS08935 NAD-dependent malic enzyme 0.87 DZA65_RS20830 phosphoenolpyruvate carboxykinase (ATP) low > 75
Dickeya dianthicola 67-19 0.75 HGI48_RS08645 NAD-dependent malic enzyme 0.88 HGI48_RS19740 phosphoenolpyruvate carboxykinase (ATP) low > 71
Dickeya dadantii 3937 0.75 DDA3937_RS08480 NAD-dependent malic enzyme 0.88 DDA3937_RS19610 phosphoenolpyruvate carboxykinase (ATP) low > 74
Rahnella sp. WP5 0.75 EX31_RS18665 NAD-dependent malic enzyme 0.85 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) 0.25 21
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_06015 NAD-dependent malic enzyme 0.81 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) low > 62
Shewanella oneidensis MR-1 0.68 SO3855 sfcA malate oxidoreductase (NCBI ptt file) 0.37 SO0162 pckA phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.67 Shewana3_0750 malate dehydrogenase (RefSeq) 0.38 Shewana3_0147 phosphoenolpyruvate carboxykinase (RefSeq) low > 73
Shewanella loihica PV-4 0.67 Shew_2962 malate dehydrogenase (RefSeq) 0.37 Shew_3623 phosphoenolpyruvate carboxykinase (RefSeq) 0.78 1
Shewanella amazonensis SB2B 0.67 Sama_2621 malate dehydrogenase (RefSeq) 0.39 Sama_0165 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_1561 NAD-dependent malic enzyme 0.34 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_1561 NAD-dependent malic enzyme 0.34 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Alteromonas macleodii MIT1002 0.64 MIT1002_00455 NAD-dependent malic enzyme 0.38 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] low > 70
Fusobacterium nucleatum SB010 0.35 HUW76_04125 NAD-dependent malic enzyme 0.39 HUW76_06485 phosphoenolpyruvate carboxykinase (ATP) low > 35

Not shown: 4 genomes with orthologs for b1479 only; 30 genomes with orthologs for b3403 only