Conservation of cofitness between b1971 and b3387 in Escherichia coli BW25113

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b1971 yedY hypothetical protein (NCBI) 1.0 b3387 dam DNA adenine methylase (NCBI) 0.17 5
Escherichia coli ECRC102 0.99 NIAGMN_02500 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 1.00 NIAGMN_14895 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC98 0.99 JDDGAC_00140 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 1.00 JDDGAC_20755 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC99 0.99 KEDOAH_02540 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 1.00 KEDOAH_11015 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC101 0.99 MCAODC_19840 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 1.00 MCAODC_07655 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC101 0.99 OKFHMN_25555 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 1.00 OKFHMN_17125 dam adenine-specific DNA-methyltransferase — —
Escherichia coli BL21 0.99 ECD_01886 membrane-anchored, periplasmic TMAO, DMSO reductase 1.00 ECD_03239 DNA adenine methyltransferase — —
Escherichia coli ECOR38 0.98 HEPCGN_03915 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 1.00 HEPCGN_15945 dam adenine-specific DNA-methyltransferase — —
Escherichia coli Nissle 1917 0.98 ECOLIN_RS11200 protein-methionine-sulfoxide reductase catalytic subunit MsrP 1.00 ECOLIN_RS19350 adenine-specific DNA-methyltransferase — —
Escherichia fergusonii Becca 0.98 EFB2_01979 Protein-methionine-sulfoxide reductase catalytic subunit MsrP 1.00 EFB2_00441 DNA adenine methylase — —
Escherichia coli ECOR27 0.98 NOLOHH_16185 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 1.00 NOLOHH_08915 dam adenine-specific DNA-methyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.98 OHPLBJKB_01758 Protein-methionine-sulfoxide reductase catalytic subunit MsrP 1.00 OHPLBJKB_00316 DNA adenine methylase low > 73
Escherichia coli ECRC62 0.93 BNILDI_14975 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 1.00 BNILDI_02605 dam adenine-specific DNA-methyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF2131 Putative sulfite oxidase subunit YedY 0.93 GFF632 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) low > 78
Klebsiella michiganensis M5al 0.88 BWI76_RS25515 sulfoxide reductase 0.81 BWI76_RS26075 DNA adenine methylase low > 92
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3304 Sulfite oxidase and related enzymes 0.79 EX28DRAFT_4155 DNA adenine methylase (dam) low > 76
Enterobacter sp. TBS_079 0.87 MPMX20_04160 Protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.79 MPMX20_04276 DNA adenine methylase low > 85
Serratia liquefaciens MT49 0.80 IAI46_22735 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.70 IAI46_23690 adenine-specific DNA-methyltransferase low > 86
Pantoea sp. MT58 0.80 IAI47_02425 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.66 IAI47_01905 adenine-specific DNA-methyltransferase — —
Pectobacterium carotovorum WPP14 0.79 HER17_RS20185 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.68 HER17_RS01790 adenine-specific DNA-methyltransferase — —
Rahnella sp. WP5 0.78 EX31_RS12225 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.67 EX31_RS04710 adenine-specific DNA-methyltransferase low > 89
Dickeya dianthicola 67-19 0.74 HGI48_RS01335 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.63 HGI48_RS19665 adenine-specific DNA-methyltransferase — —
Dickeya dadantii 3937 0.74 DDA3937_RS01415 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.65 DDA3937_RS19535 adenine-specific DNA-methyltransferase — —
Dickeya dianthicola ME23 0.74 DZA65_RS01395 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.64 DZA65_RS20750 adenine-specific DNA-methyltransferase — —
Erwinia tracheiphila SCR3 0.73 LU632_RS21465 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.69 LU632_RS22855 dam adenine-specific DNA-methyltransferase — —
Alteromonas macleodii MIT1002 0.59 MIT1002_02309 Sulfoxide reductase catalytic subunit YedY precursor 0.56 MIT1002_00445 DNA adenine methylase — —
Shewanella sp. ANA-3 0.57 Shewana3_2234 putative sulfite oxidase subunit YedY (RefSeq) 0.57 Shewana3_3891 DNA adenine methylase (RefSeq) — —
Shewanella oneidensis MR-1 0.57 SO2042 conserved hypothetical protein (NCBI ptt file) 0.58 SO0289 dam DNA adenine methylase (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.56 Sama_1893 putative sulfite oxidase subunit YedY (RefSeq) 0.59 Sama_3365 site-specific DNA-methyltransferase (adenine-specific) (RefSeq) low > 62
Shewanella loihica PV-4 0.53 Shew_2123 putative sulfite oxidase subunit YedY (RefSeq) 0.57 Shew_0216 DNA adenine methylase (RefSeq) low > 60
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_05604 sulfoxide reductase catalytic subunit YedY 0.17 H281DRAFT_02258 DNA adenine methylase low > 103
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS02650 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.19 ABZR87_RS05395 Dam family site-specific DNA-(adenine-N6)-methyltransferase low > 80

Not shown: 43 genomes with orthologs for b1971 only; 9 genomes with orthologs for b3387 only