Homologs of HMPREF1058_RS15945 from Phocaeicola vulgatus CL09T03C04

helix-turn-helix domain-containing protein
SEED: DNA-binding response regulator, AraC family

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15945 helix-turn-helix domain-containing protein insig. 100 100
o Phocaeicola dorei CL03T12C01 ABI39_RS11905 helix-turn-helix domain-containing protein insig. 59 99
  Bacteroides ovatus ATCC 8483 BACOVA_02065 response regulator receiver domain protein insig. 37 84
  Bacteroides ovatus ATCC 8483 BACOVA_04371 response regulator receiver domain protein insig. 35 84
  Bacteroides thetaiotaomicron VPI-5482 BT1635 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) insig. 34 84
  Bacteroides thetaiotaomicron VPI-5482 BT4137 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) insig. 34 81
  Bacteroides thetaiotaomicron VPI-5482 BT3172 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) insig. 33 81
  Phocaeicola dorei CL03T12C01 ABI39_RS02825 response regulator insig. 34 82
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS08595 response regulator insig. 34 82
  Bacteroides thetaiotaomicron VPI-5482 BT2826 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) cofit 32 83
  Bacteroides ovatus ATCC 8483 BACOVA_03504 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein insig. 32 84
  Bacteroides stercoris CC31F HMPREF1181_RS02790 response regulator insig. 33 82
  Bacteroides stercoris CC31F HMPREF1181_RS05430 response regulator insig. 32 84
  Phocaeicola dorei CL03T12C01 ABI39_RS05130 response regulator insig. 31 78
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS11775 response regulator sig. 30 78
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS13160 response regulator cofit 28 83
  Bacteroides ovatus ATCC 8483 BACOVA_01894 transcriptional regulator, AraC family strong 23 98
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07185 two-component regulator propeller domain-containing protein insig. 24 87
  Phocaeicola dorei CL03T12C01 ABI39_RS04050 helix-turn-helix domain-containing protein insig. 22 99
  Bacteroides thetaiotaomicron VPI-5482 BT4663 two-component system sensor histidine kinase/response (NCBI ptt file) strong 23 84
  Bacteroides ovatus ATCC 8483 BACOVA_05479 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein insig. 23 83
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS13495 hybrid sensor histidine kinase/response regulator transcription factor insig. 23 91
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00710 hypothetical protein insig. 24 84
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS06050 hypothetical protein insig. 23 88
  Bacteroides stercoris CC31F HMPREF1181_RS08545 response regulator insig. 23 84
  Bacteroides stercoris CC31F HMPREF1181_RS06690 response regulator sig. 22 85
  Bacteroides ovatus ATCC 8483 BACOVA_04483 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein cofit 24 82
  Bacteroides ovatus ATCC 8483 BACOVA_03607 putative flagellar protein FliS insig. 22 83
  Bacteroides ovatus ATCC 8483 BACOVA_02648 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein cofit 23 84
  Bacteroides thetaiotaomicron VPI-5482 BT2923 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) insig. 22 84
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3754 Signal transduction histidine kinase insig. 24 83
  Bacteroides ovatus ATCC 8483 BACOVA_00493 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein insig. 23 85
  Bacteroides stercoris CC31F HMPREF1181_RS08430 response regulator insig. 22 83
  Bacteroides ovatus ATCC 8483 BACOVA_02182 response regulator receiver domain protein cofit 22 84
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS11130 two-component regulator propeller domain-containing protein cofit 23 85
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4259 His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Y_Y_Y domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Two component regulator propeller./Bacterial regulatory helix-turn-helix proteins, AraC family. insig. 23 88
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14215 hypothetical protein insig. 24 84
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11205 hybrid sensor histidine kinase/response regulator insig. 22 82
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS06780 hybrid sensor histidine kinase/response regulator insig. 24 81
  Bacteroides ovatus ATCC 8483 BACOVA_04394 response regulator receiver domain protein strong 22 83
  Bacteroides ovatus ATCC 8483 BACOVA_01840 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein cofit 22 83
  Bacteroides ovatus ATCC 8483 BACOVA_02065 response regulator receiver domain protein insig. 56 13
  Bacteroides stercoris CC31F HMPREF1181_RS02335 response regulator strong 29 41
  Phocaeicola dorei CL03T12C01 ABI39_RS03465 response regulator sig. 21 94
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS02485 hypothetical protein insig. 27 45
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2760 Signal transduction histidine kinase insig. 24 40
  Bacteroides stercoris CC31F HMPREF1181_RS02790 response regulator insig. 45 16
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14910 helix-turn-helix domain-containing protein insig. 22 81
  Bacteroides thetaiotaomicron VPI-5482 BT3465 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) insig. 22 81
  Phocaeicola dorei CL03T12C01 ABI39_RS10630 helix-turn-helix domain-containing protein insig. 22 87
  Bacteroides ovatus ATCC 8483 BACOVA_03437 response regulator receiver domain protein strong 22 77
  Phocaeicola dorei CL03T12C01 ABI39_RS08945 helix-turn-helix domain-containing protein insig. 25 43
  Bacteroides stercoris CC31F HMPREF1181_RS05430 response regulator insig. 44 15
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS13435 helix-turn-helix domain-containing protein insig. 25 43
  Cellulophaga baltica 18 M666_RS18760 sensor histidine kinase insig. 22 92
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS13410 hypothetical protein insig. 21 82
  Bacteroides thetaiotaomicron VPI-5482 BT2860 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) insig. 20 82
  Bacteroides ovatus ATCC 8483 BACOVA_03441 response regulator receiver domain protein insig. 22 83
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS11200 hybrid sensor histidine kinase/response regulator transcription factor insig. 21 91
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS15155 hybrid sensor histidine kinase/response regulator transcription factor cofit 23 81
  Bacteroides thetaiotaomicron VPI-5482 BT1635 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) insig. 43 16
  Phocaeicola dorei CL03T12C01 ABI39_RS02825 response regulator insig. 42 16
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS08595 response regulator insig. 41 16
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0504 Signal transduction histidine kinase insig. 22 81
  Cellulophaga baltica 18 M666_RS02185 two-component regulator propeller domain-containing protein insig. 22 80
  Bacteroides thetaiotaomicron VPI-5482 BT3172 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) insig. 42 16
  Bacteroides ovatus ATCC 8483 BACOVA_03504 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein insig. 39 19
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS08375 two-component regulator propeller domain-containing protein insig. 22 83
  Bacteroides thetaiotaomicron VPI-5482 BT4137 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) insig. 41 16
  Phocaeicola dorei CL03T12C01 ABI39_RS00165 response regulator strong 20 83
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS19095 hybrid sensor histidine kinase/response regulator insig. 19 80
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS05785 hypothetical protein insig. 22 78
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4346 Signal transduction histidine kinase insig. 22 81
  Bacteroides thetaiotaomicron VPI-5482 BT3334 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) strong 27 40
  Phocaeicola dorei CL03T12C01 ABI39_RS03955 response regulator insig. 21 80
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS09500 response regulator insig. 21 80
  Bacteroides ovatus ATCC 8483 BACOVA_04371 response regulator receiver domain protein insig. 40 15
  Rhodanobacter denitrificans MT42 LRK55_RS12100 hybrid sensor histidine kinase/response regulator strong 19 80
  Bacteroides ovatus ATCC 8483 BACOVA_01996 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein strong 26 40
  Phocaeicola dorei CL03T12C01 ABI39_RS00425 helix-turn-helix domain-containing protein insig. 24 43
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15110 response regulator insig. 20 80
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS12365 ATP-binding protein insig. 19 80
  Cellulophaga baltica 18 M666_RS00005 two-component regulator propeller domain-containing protein insig. 24 78
  Phocaeicola dorei CL03T12C01 ABI39_RS10925 response regulator insig. 21 83
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11435 two-component regulator propeller domain-containing protein cofit 26 44
  Shewanella sp. ANA-3 Shewana3_3829 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) cofit 21 81
  Bacteroides thetaiotaomicron VPI-5482 BT3660 transcriptional regulator (NCBI ptt file) insig. 23 40
  Bacteroides ovatus ATCC 8483 BACOVA_01673 response regulator receiver domain protein insig. 22 82
  Bacteroides ovatus ATCC 8483 BACOVA_02857 conserved hypothetical protein TIGR03982 insig. 21 83
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10265 hypothetical protein insig. 23 79
  Bacteroides ovatus ATCC 8483 BACOVA_00239 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein insig. 22 78
  Shewanella oneidensis MR-1 SO0341 sensory box protein (NCBI ptt file) insig. 25 39
  Bacteroides thetaiotaomicron VPI-5482 BT0958 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) insig. 20 92
  Bacteroides ovatus ATCC 8483 BACOVA_03489 transcriptional regulator, AraC family insig. 24 43
  Bacteroides thetaiotaomicron VPI-5482 BT2897 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) insig. 22 86
  Shewanella amazonensis SB2B Sama_3298 sensory box protein (RefSeq) insig. 21 81
  Bacteroides thetaiotaomicron VPI-5482 BT2826 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) cofit 45 12
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS08780 hybrid sensor histidine kinase/response regulator transcription factor insig. 25 40
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15170 response regulator insig. 20 83
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS08780 hybrid sensor histidine kinase/response regulator transcription factor insig. 21 79