| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_1997 | | amino acid ABC transporter substrate-binding protein, PAAT family | 1.0 | Psyr_2057 | | acyl-CoA thioesterase II, putative | 0.45 | 2 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_1997 | | amino acid ABC transporter substrate-binding protein, PAAT family | 1.00 | Psyr_2057 | | acyl-CoA thioesterase II, putative | 0.45 | 29 |
| Pseudomonas fluorescens FW300-N2C3 | 0.64 | AO356_20330 | | ABC transporter substrate-binding protein | 0.68 | AO356_03275 | | acyl-CoA thioesterase | low | > 104 |
| Pseudomonas simiae WCS417 | 0.63 | PS417_21290 | | ABC transporter substrate-binding protein | 0.67 | PS417_08325 | | acyl-CoA thioesterase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.62 | Pf6N2E2_5985 | | Extracellular solute-binding protein, family 3 | 0.67 | Pf6N2E2_2486 | | TesB-like acyl-CoA thioesterase 1 | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.62 | Pf1N1B4_390 | | Extracellular solute-binding protein, family 3 | 0.62 | Pf1N1B4_307 | | TesB-like acyl-CoA thioesterase 1 | low | > 87 |
| Pseudomonas sp. RS175 | 0.62 | PFR28_02976 | | hypothetical protein | 0.67 | PFR28_00947 | | Acyl-CoA thioesterase 2 | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.61 | PFLU_RS22910 | | transporter substrate-binding domain-containing protein | 0.67 | PFLU_RS08265 | | thioesterase family protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.61 | PFLU_RS22910 | | transporter substrate-binding domain-containing protein | 0.67 | PFLU_RS08265 | | thioesterase family protein | low | > 109 |
| Pseudomonas lactucae CFBP13502 | 0.60 | GEMAOFIL_04400 | | hypothetical protein | 0.67 | GEMAOFIL_01794 | | hypothetical protein | low | > 93 |
| Pseudomonas sp. SVBP6 | 0.60 | COO64_RS18835 | | ABC transporter substrate-binding protein | 0.65 | COO64_RS09725 | | acyl-CoA thioesterase II | low | > 93 |
| Pseudomonas fluorescens GW456-L13 | 0.59 | PfGW456L13_2138 | | Extracellular solute-binding protein, family 3 | 0.64 | PfGW456L13_2209 | | TesB-like acyl-CoA thioesterase 1 | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.59 | AO353_01225 | | ABC transporter substrate-binding protein | 0.67 | AO353_18955 | | acyl-CoA thioesterase | low | > 101 |
| Pseudomonas sp. BP01 | 0.58 | JOY50_RS19015 | | ABC transporter substrate-binding protein | 0.60 | JOY50_RS25875 | | acyl-CoA thioesterase II | low | > 84 |
| Pseudomonas putida KT2440 | 0.58 | PP_4200 | | conserved exported protein of unknown function | 0.60 | PP_2308 | | putative Acyl-CoA thioesterase II | low | > 96 |
| Pseudomonas sp. DMC3 | 0.58 | GFF4716 | | hypothetical protein | 0.65 | GFF4638 | | Acyl-CoA thioesterase 2 | low | > 89 |
| Pseudomonas sp. S08-1 | 0.46 | OH686_04215 | | ABC-type amino acid transport/signal transduction system, periplasmic component/domain | 0.64 | OH686_01845 | | TesB-like acyl-CoA thioesterase 1 | low | > 80 |
| Pseudomonas segetis P6 | 0.44 | MPMX49_02130 | | hypothetical protein | 0.64 | MPMX49_02665 | | Acyl-CoA thioesterase 2 | low | > 75 |
| Pseudomonas aeruginosa PA14 | 0.44 | IKLFDK_14745 | | amino acid ABC transporter substrate-binding protein | 0.57 | IKLFDK_14590 | | acyl-CoA thioesterase II | low | > 100 |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_1707 | | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | 0.64 | Psest_2455 | | Acyl-CoA thioesterase | low | > 67 |
| Marinobacter adhaerens HP15 | 0.23 | HP15_4048 | | extracellular solute-binding protein, family 3 | 0.49 | HP15_589 | | acyl-CoA thioesterase II | low | > 73 |
Not shown: 1 genomes with orthologs for Psyr_1997 only; 11 genomes with orthologs for Psyr_2057 only