Conservation of cofitness between PP_4493 and PP_2910 in Pseudomonas putida KT2440

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4493 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) 1.0 PP_2910 L-2-hydroxyglutarate oxidase 0.45 16
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_4229 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD 0.14 Pf1N1B4_4264 Aminobutyraldehyde dehydrogenase (EC 1.2.1.19) 0.26 73
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_29050 hypothetical protein 0.14 AO356_26445 FAD-dependent oxidoreductase low > 104
Pseudomonas sp. RS175 0.67 PFR28_01530 hypothetical protein 0.15 PFR28_02641 L-2-hydroxyglutarate dehydrogenase low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_02037 hypothetical protein 0.68 OHPLBJKB_01072 L-2-hydroxyglutarate oxidase LhgO low > 73
Escherichia coli BL21 0.48 ECD_01656 putative FAD-linked oxidoreductase 0.68 ECD_02516 L-2-hydroxyglutarate oxidase low > 60
Escherichia coli ECRC101 0.48 MCAODC_18180 ydiJ Uncharacterized protein YdiJ 0.68 MCAODC_11440 lhgO L-2-hydroxyglutarate oxidase — —
Escherichia coli ECRC101 0.48 OKFHMN_27230 ydiJ Uncharacterized protein YdiJ 0.68 OKFHMN_20920 lhgO L-2-hydroxyglutarate oxidase — —
Escherichia coli ECRC62 0.48 BNILDI_16540 ydiJ Uncharacterized protein YdiJ 0.67 BNILDI_11305 lhgO L-2-hydroxyglutarate oxidase — —
Escherichia coli ECRC102 0.48 NIAGMN_00835 ydiJ Uncharacterized protein YdiJ 0.68 NIAGMN_18685 lhgO L-2-hydroxyglutarate oxidase — —
Escherichia coli ECRC98 0.48 JDDGAC_01805 ydiJ Uncharacterized protein YdiJ 0.68 JDDGAC_24580 lhgO L-2-hydroxyglutarate oxidase — —
Escherichia coli ECRC99 0.48 KEDOAH_00880 ydiJ Uncharacterized protein YdiJ 0.68 KEDOAH_07220 lhgO L-2-hydroxyglutarate oxidase — —
Escherichia coli BW25113 0.48 b1687 ydiJ predicted FAD-linked oxidoreductase (NCBI) 0.68 b2660 ygaF orf, hypothetical protein (VIMSS) low > 76
Escherichia coli ECOR38 0.48 HEPCGN_05615 ydiJ Uncharacterized protein YdiJ 0.68 HEPCGN_20145 lhgO L-2-hydroxyglutarate oxidase low > 85
Escherichia coli Nissle 1917 0.48 ECOLIN_RS09430 FAD-binding and (Fe-S)-binding domain-containing protein 0.67 ECOLIN_RS14835 L-2-hydroxyglutarate oxidase low > 52
Escherichia fergusonii Becca 0.48 EFB2_02305 hypothetical protein 0.67 EFB2_01270 L-2-hydroxyglutarate dehydrogenase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF3554 Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD 0.66 GFF1565 L-2-hydroxyglutarate oxidase (EC 1.1.3.15) low > 78
Escherichia coli ECOR27 0.48 NOLOHH_17750 ydiJ Uncharacterized protein YdiJ 0.68 NOLOHH_12745 lhgO L-2-hydroxyglutarate oxidase — —
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_06060 FAD-binding oxidoreductase 0.54 CSW01_14740 L-2-hydroxyglutarate oxidase low > 62
Shewanella loihica PV-4 0.45 Shew_1550 FAD linked oxidase domain-containing protein (RefSeq) 0.17 Shew_0530 FAD dependent oxidoreductase (RefSeq) low > 60
Rhodospirillum rubrum S1H 0.32 Rru_A2060 FAD linked oxidase (NCBI) 0.15 Rru_A2648 FAD dependent oxidoreductase (NCBI) low > 58
Echinicola vietnamensis KMM 6221, DSM 17526 0.21 Echvi_3865 FAD/FMN-containing dehydrogenases 0.40 Echvi_3348 Predicted dehydrogenase low > 79
Burkholderia phytofirmans PsJN 0.18 BPHYT_RS33430 dimethylmenaquinone methyltransferase 0.52 BPHYT_RS28480 hydroxyglutarate oxidase low > 109
Paraburkholderia graminis OAS925 0.18 ABIE53_004900 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase 0.12 ABIE53_000455 L-2-hydroxyglutarate oxidase LhgO low > 113
Paraburkholderia sabiae LMG 24235 0.17 QEN71_RS40185 FAD-binding and (Fe-S)-binding domain-containing protein 0.13 QEN71_RS00575 NAD(P)/FAD-dependent oxidoreductase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.16 H281DRAFT_03563 FAD/FMN-containing dehydrogenase 0.13 H281DRAFT_02167 L-2-hydroxyglutarate oxidase LhgO low > 103
Variovorax sp. SCN45 0.16 GFF1371 Fe-S protein, homolog of lactate dehydrogenase SO1521 0.14 GFF957 Aminobutyraldehyde dehydrogenase (EC 1.2.1.19) low > 127
Variovorax sp. OAS795 0.16 ABID97_RS15850 FAD-linked oxidase C-terminal domain-containing protein 0.15 ABID97_RS14050 NAD(P)/FAD-dependent oxidoreductase low > 91
Cupriavidus basilensis FW507-4G11 0.15 RR42_RS30390 lactate dehydrogenase 0.13 RR42_RS06495 FAD-dependent oxidoreductase low > 128

Not shown: 18 genomes with orthologs for PP_4493 only; 16 genomes with orthologs for PP_2910 only