Conservation of cofitness between PP_4688 and PP_2425 in Pseudomonas putida KT2440

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4688 Heme/hemin ABC transporter, permease protein 1.0 PP_2425 putative transcriptional regulator, AraC family 0.17 2
Pseudomonas simiae WCS417 0.84 PS417_23850 ABC transporter permease 0.66 PS417_21310 AraC family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25 0.83 PFLU_RS25690 iron ABC transporter permease 0.67 PFLU_RS22930 AraC family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.83 PFLU_RS25690 iron ABC transporter permease 0.67 PFLU_RS22930 AraC family transcriptional regulator low > 109
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_2867 Hemin ABC transporter, permease protein 0.66 Pf1N1B4_394 Transcriptional regulator, AraC family low > 87
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_14445 ABC transporter permease 0.69 AO353_01245 AraC family transcriptional regulator low > 101
Pseudomonas sp. RS175 0.79 PFR28_03709 Hemin transport system permease protein HmuU 0.68 PFR28_02981 HTH-type transcriptional activator RhaS low > 88
Pseudomonas fluorescens FW300-N2E2 0.79 Pf6N2E2_5165 Hemin ABC transporter, permease protein 0.68 Pf6N2E2_5981 Transcriptional regulator, AraC family low > 103
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_16120 ABC transporter permease 0.68 AO356_20310 AraC family transcriptional regulator low > 104
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_3769 Hemin ABC transporter, permease protein 0.66 PfGW456L13_2133 Transcriptional regulator, AraC family low > 87
Escherichia coli ECRC102 0.35 NIAGMN_14090 chuU heme permease protein ChuU 0.36 NIAGMN_16715 yqhC DNA-binding transcriptional regulator YqhC
Escherichia coli ECRC98 0.35 JDDGAC_19955 chuU heme permease protein ChuU 0.36 JDDGAC_22585 yqhC DNA-binding transcriptional regulator YqhC
Escherichia coli ECRC101 0.35 OKFHMN_16325 chuU heme permease protein ChuU 0.36 OKFHMN_18950 yqhC DNA-binding transcriptional regulator YqhC
Escherichia coli ECRC99 0.35 KEDOAH_11820 chuU heme permease protein ChuU 0.36 KEDOAH_09195 yqhC DNA-binding transcriptional regulator YqhC
Rahnella sp. WP5 0.35 EX31_RS13960 iron ABC transporter permease 0.36 EX31_RS08035 AraC family transcriptional regulator low > 89
Escherichia fergusonii Becca 0.35 EFB2_00303 Hemin transport system permease protein HmuU 0.36 EFB2_00800 HTH-type transcriptional activator RhaS low > 86
Escherichia coli ECOR38 0.35 HEPCGN_15225 shuU heme ABC transporter permease ShuU/ChuU 0.37 HEPCGN_17815 yqhC DNA-binding transcriptional regulator YqhC low > 85
Enterobacter sp. TBS_079 0.35 MPMX20_01915 Hemin transport system permease protein HmuU 0.36 MPMX20_01151 HTH-type transcriptional activator RhaS low > 85
Escherichia coli ECRC101 0.35 MCAODC_06840 chuU heme permease protein ChuU 0.36 MCAODC_09465 yqhC DNA-binding transcriptional regulator YqhC
Escherichia coli Nissle 1917 0.35 ECOLIN_RS20060 heme ABC transporter permease ShuU/ChuU 0.36 ECOLIN_RS17325 DNA-binding transcriptional regulator YqhC low > 52
Serratia liquefaciens MT49 0.34 IAI46_11075 iron ABC transporter permease 0.35 IAI46_21745 AraC family transcriptional regulator low > 86
Pectobacterium carotovorum WPP14 0.33 HER17_RS08860 iron ABC transporter permease 0.37 HER17_RS19700 AraC family transcriptional regulator low > 75
Pantoea sp. MT58 0.33 IAI47_03525 iron ABC transporter permease 0.35 IAI47_03205 AraC family transcriptional regulator low > 76
Klebsiella michiganensis M5al 0.32 BWI76_RS17110 vitamin B12 ABC transporter permease BtuC 0.36 BWI76_RS21850 AraC family transcriptional regulator low > 92
Enterobacter asburiae PDN3 0.31 EX28DRAFT_1718 ABC-type cobalamin transport system, permease component 0.33 EX28DRAFT_3048 AraC-type DNA-binding domain-containing proteins low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF3529 Vitamin B12 ABC transporter, permease component BtuC 0.34 GFF3122 Transcriptional regulator, AraC family low > 78
Dickeya dadantii 3937 0.29 DDA3937_RS12965 vitamin B12 ABC transporter permease BtuC 0.36 DDA3937_RS01805 AraC family transcriptional regulator low > 74
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_02022 Vitamin B12 import system permease protein BtuC 0.37 OHPLBJKB_00691 HTH-type transcriptional activator RhaS low > 73
Escherichia coli ECOR27 0.28 NOLOHH_17620 btuC vitamin B12 ABC transporter permease BtuC 0.37 NOLOHH_10725 yqhC DNA-binding transcriptional regulator YqhC
Escherichia coli BL21 0.28 ECD_01680 vitamin B12 ABC transporter permease 0.37 ECD_02883 transcriptional activator of yqhD
Escherichia coli BW25113 0.28 b1711 btuC vtamin B12-transporter permease (NCBI) 0.36 b3010 yqhC putative ARAC-type regulatory protein (VIMSS) low > 76
Dickeya dianthicola ME23 0.28 DZA65_RS13500 vitamin B12 ABC transporter permease BtuC 0.36 DZA65_RS01775 AraC family transcriptional regulator low > 75
Dickeya dianthicola 67-19 0.27 HGI48_RS13035 vitamin B12 ABC transporter permease BtuC 0.35 HGI48_RS01700 AraC family transcriptional regulator low > 71

Not shown: 24 genomes with orthologs for PP_4688 only; 10 genomes with orthologs for PP_2425 only