Conservation of cofitness between IAI46_23250 and IAI46_14260 in Serratia liquefaciens MT49

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Serratia liquefaciens MT49 1.0 IAI46_23250 topoisomerase DNA-binding C4 zinc finger domain-containing protein 1.0 IAI46_14260 YchJ family protein 0.46 11
Rahnella sp. WP5 0.79 EX31_RS15960 hypothetical protein 0.53 EX31_RS10110 YchJ family protein low > 89
Klebsiella michiganensis M5al 0.78 BWI76_RS25655 DNA topoisomerase type IA zn finger domain-containing protein 0.55 BWI76_RS17285 hypothetical protein low > 92
Pectobacterium carotovorum WPP14 0.77 HER17_RS02240 topoisomerase DNA-binding C4 zinc finger domain-containing protein 0.60 HER17_RS11060 YchJ family protein low > 75
Escherichia coli ECOR38 0.76 HEPCGN_16375 yrdD Uncharacterized protein YrdD 0.54 HEPCGN_25035 ychJ YchJ family protein low > 85
Dickeya dadantii 3937 0.76 DDA3937_RS22495 topoisomerase DNA-binding C4 zinc finger domain-containing protein 0.56 DDA3937_RS10330 YchJ family protein low > 74
Dickeya dianthicola ME23 0.76 DZA65_RS20325 hypothetical protein 0.58 DZA65_RS10815 YchJ family protein low > 75
Escherichia coli ECRC62 0.76 BNILDI_02175 yrdD Uncharacterized protein YrdD 0.54 BNILDI_18630 ychJ YchJ family protein — —
Escherichia coli Nissle 1917 0.76 ECOLIN_RS18850 type I DNA topoisomerase 0.55 ECOLIN_RS07465 YchJ family protein — —
Dickeya dianthicola 67-19 0.76 HGI48_RS19200 topoisomerase DNA-binding C4 zinc finger domain-containing protein 0.58 HGI48_RS10340 YchJ family protein low > 71
Escherichia fergusonii Becca 0.76 EFB2_00540 DNA topoisomerase 1 0.54 EFB2_02693 hypothetical protein low > 86
Escherichia coli ECOR27 0.76 NOLOHH_09345 yrdD Uncharacterized protein YrdD 0.54 NOLOHH_20475 ychJ YchJ family protein low > 57
Enterobacter asburiae PDN3 0.76 EX28DRAFT_0044 Zn-finger domain associated with topoisomerase type I 0.57 EX28DRAFT_0859 Uncharacterized protein conserved in bacteria low > 76
Enterobacter sp. TBS_079 0.75 MPMX20_04191 DNA topoisomerase 1 0.59 MPMX20_02595 hypothetical protein low > 85
Escherichia coli ECRC98 0.75 JDDGAC_21175 yrdD Uncharacterized protein YrdD 0.54 JDDGAC_06000 ychJ YchJ family protein — —
Escherichia coli ECRC101 0.75 OKFHMN_17555 yrdD Uncharacterized protein YrdD 0.54 OKFHMN_28575 ychJ YchJ family protein — —
Escherichia coli BW25113 0.75 b3283 yrdD predicted DNA topoisomerase (NCBI) 0.55 b1233 ychJ hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_00420 DNA topoisomerase 1 0.55 OHPLBJKB_02452 hypothetical protein low > 73
Escherichia coli BL21 0.75 ECD_03134 ssDNA-binding protein, function unknown 0.55 ECD_01209 UPF0225 family protein low > 60
Escherichia coli ECRC102 0.75 NIAGMN_15315 yrdD Uncharacterized protein YrdD 0.54 NIAGMN_27660 ychJ YchJ family protein — —
Escherichia coli ECRC99 0.75 KEDOAH_10595 yrdD Uncharacterized protein YrdD 0.54 KEDOAH_25570 ychJ YchJ family protein — —
Escherichia coli ECRC101 0.75 MCAODC_08075 yrdD Uncharacterized protein YrdD 0.54 MCAODC_21685 ychJ YchJ family protein — —
Erwinia tracheiphila SCR3 0.72 LU632_RS22455 topoisomerase DNA-binding C4 zinc finger domain-containing protein 0.54 LU632_RS12935 YchJ family protein low > 74
Pantoea sp. MT58 0.71 IAI47_02305 topoisomerase DNA-binding C4 zinc finger domain-containing protein 0.53 IAI47_09015 YchJ family protein low > 76
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_00255 DNA topoisomerase 0.41 CSW01_09275 hypothetical protein low > 62
Shewanella sp. ANA-3 0.42 Shewana3_0039 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) 0.28 Shewana3_2159 SecC motif-containing protein (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.42 MIT1002_00024 DNA topoisomerase 1 0.23 MIT1002_02313 SEC-C motif low > 70
Shewanella oneidensis MR-1 0.41 SO0036 topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) 0.29 SO2497 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.41 Sama_0048 topoisomerase DNA-binding C4 zinc finger domain-containing protein (RefSeq) 0.30 Sama_1820 metal-binding protein (RefSeq) low > 62
Shewanella loihica PV-4 0.40 Shew_3731 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) 0.31 Shew_2056 SecC motif-containing protein (RefSeq) — —

Not shown: 1 genomes with orthologs for IAI46_23250 only; 44 genomes with orthologs for IAI46_14260 only