Conservation of cofitness between HSERO_RS23825 and HSERO_RS22955 in Herbaspirillum seropedicae SmR1

18 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS23825 hypothetical protein 1.0 HSERO_RS22955 D-amino acid dehydrogenase 0.48 5
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS19575 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.27 BPHYT_RS26530 amino acid dehydrogenase low > 109
Paraburkholderia graminis OAS925 0.28 ABIE53_000291 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein 0.18 ABIE53_004136 D-amino-acid dehydrogenase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_02360 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein 0.23 H281DRAFT_06095 D-amino-acid dehydrogenase low > 103
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS12805 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.28 ABZR87_RS07655 FAD-dependent oxidoreductase low > 80
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS29485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.23 QEN71_RS31650 FAD-dependent oxidoreductase low > 153
Ralstonia solanacearum GMI1000 0.25 RS_RS08635 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.29 RS_RS02525 FAD-dependent oxidoreductase low > 80
Ralstonia solanacearum PSI07 0.25 RPSI07_RS16115 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.29 RPSI07_RS21515 FAD-dependent oxidoreductase low > 81
Ralstonia solanacearum IBSBF1503 0.24 RALBFv3_RS01360 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.29 RALBFv3_RS11700 FAD-dependent oxidoreductase low > 76
Ralstonia solanacearum UW163 0.24 UW163_RS14670 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.29 UW163_RS01885 FAD-dependent oxidoreductase — —
Pseudomonas fluorescens GW456-L13 0.19 PfGW456L13_2155 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.20 PfGW456L13_3586 D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster low > 87
Pseudomonas simiae WCS417 0.17 PS417_19225 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.18 PS417_14320 FAD-dependent oxidoreductase low > 88
Pseudomonas putida KT2440 0.17 PP_1751 methyltransferase/FAD-dependent oxidoreductase 0.20 PP_1255 putative cis-4-hydroxy-D-proline oxidase low > 96
Pseudomonas fluorescens SBW25 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.20 PFLU_RS16215 FAD-binding oxidoreductase low > 109
Pseudomonas fluorescens SBW25-INTG 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.20 PFLU_RS16215 FAD-binding oxidoreductase low > 109
Variovorax sp. SCN45 0.14 GFF1245 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.56 GFF6784 D-amino acid dehydrogenase (EC 1.4.99.6) low > 127
Castellaniella sp019104865 MT123 0.13 ABCV34_RS09580 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.24 ABCV34_RS10190 FAD-dependent oxidoreductase low > 48
Shewanella loihica PV-4 0.12 Shew_2411 FAD dependent oxidoreductase (RefSeq) 0.23 Shew_2360 D-hydroxyproline dehydrogenase (from data) low > 60
Variovorax sp. OAS795 0.12 ABID97_RS15455 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.53 ABID97_RS21150 FAD-dependent oxidoreductase low > 91

Not shown: 46 genomes with orthologs for HSERO_RS23825 only; 9 genomes with orthologs for HSERO_RS22955 only