Conservation of cofitness between HGI48_RS09760 and HGI48_RS12910 in Dickeya dianthicola 67-19

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola 67-19 1.0 HGI48_RS09760 SDR family oxidoreductase 1.0 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.59 8
Dickeya dianthicola ME23 0.97 DZA65_RS10070 SDR family oxidoreductase 1.00 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Dickeya dadantii 3937 0.95 DDA3937_RS09745 SDR family oxidoreductase 0.94 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Pectobacterium carotovorum WPP14 0.66 HER17_RS12215 SDR family oxidoreductase 0.83 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Serratia liquefaciens MT49 0.66 IAI46_08225 SDR family oxidoreductase 0.82 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 86
Rahnella sp. WP5 0.65 EX31_RS11430 SDR family oxidoreductase 0.81 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 89
Escherichia coli ECRC62 0.63 BNILDI_14755 yeeZ Protein YeeZ 0.75 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Pantoea sp. MT58 0.63 IAI47_07105 SDR family oxidoreductase 0.74 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 76
Erwinia tracheiphila SCR3 0.63 LU632_RS08960 SDR family oxidoreductase 0.72 LU632_RS09965 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Enterobacter sp. TBS_079 0.61 MPMX20_03000 Protein YeeZ 0.76 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L low > 85
Klebsiella michiganensis M5al 0.61 BWI76_RS18915 NAD(P)-dependent oxidoreductase 0.76 BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase low > 92
Enterobacter asburiae PDN3 0.60 EX28DRAFT_0542 Nucleoside-diphosphate-sugar epimerases 0.75 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase low > 76
Escherichia coli ECRC98 0.60 JDDGAC_28640 yeeZ Protein YeeZ 0.75 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 86
Escherichia coli BW25113 0.59 b2016 yeeZ predicted epimerase, with NAD(P)-binding Rossmann-fold domain (NCBI) 0.75 b0948 ycbY predicted methyltransferase (NCBI) low > 76
Escherichia coli ECOR27 0.59 NOLOHH_15855 yeeZ Protein YeeZ 0.75 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Escherichia coli BL21 0.59 ECD_01919 putative epimerase 0.75 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent low > 61
Escherichia coli ECOR38 0.59 HEPCGN_03235 yeeZ Protein YeeZ 0.75 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 87
Escherichia coli ECRC101 0.59 MCAODC_20410 yeeZ Protein YeeZ 0.75 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 87
Escherichia coli ECRC99 0.59 KEDOAH_03620 yeeZ Protein YeeZ 0.75 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC100 0.59 OKFHMN_24530 yeeZ Protein YeeZ 0.75 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_01684 Protein YeeZ 0.75 OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L low > 73
Escherichia coli ECRC102 0.59 NIAGMN_22475 yeeZ Protein YeeZ 0.75 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia fergusonii Becca 0.59 EFB2_01840 Protein YeeZ 0.75 EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L low > 86
Escherichia coli Nissle 1917 0.59 ECOLIN_RS11925 SDR family oxidoreductase 0.75 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF3914 Nucleoside-diphosphate-sugar epimerases 0.76 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 78
Shewanella sp. ANA-3 0.32 Shewana3_1572 NAD-dependent epimerase/dehydratase (RefSeq) 0.48 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.31 SO2861 conserved hypothetical protein (NCBI ptt file) 0.48 SO1851 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.31 Shew_2374 NAD-dependent epimerase/dehydratase (RefSeq) 0.47 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) — —
Shewanella amazonensis SB2B 0.31 Sama_1520 NAD-dependent epimerase/dehydratase (RefSeq) 0.49 Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.22 MIT1002_03425 UDP-glucose 4-epimerase 0.44 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L low > 70
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_08540 NAD(P)-dependent oxidoreductase 0.58 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L low > 62

Not shown: 12 genomes with orthologs for HGI48_RS09760 only; 23 genomes with orthologs for HGI48_RS12910 only