Conservation of cofitness between HER17_RS12475 and HER17_RS20690 in Pectobacterium carotovorum WPP14

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 1.0 HER17_RS20690 HTH-type transcriptional regulator MetR 0.66 20
Dickeya dadantii 3937 0.79 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.91 DDA3937_RS20385 HTH-type transcriptional regulator MetR low > 74
Dickeya dianthicola 67-19 0.79 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.91 HGI48_RS00815 HTH-type transcriptional regulator MetR low > 71
Dickeya dianthicola ME23 0.78 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.91 DZA65_RS00870 HTH-type transcriptional regulator MetR low > 75
Serratia liquefaciens MT49 0.78 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.88 IAI46_01030 HTH-type transcriptional regulator MetR low > 86
Rahnella sp. WP5 0.75 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.92 EX31_RS25370 HTH-type transcriptional regulator MetR low > 89
Pantoea sp. MT58 0.74 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.85 IAI47_18315 HTH-type transcriptional regulator MetR low > 76
Escherichia coli ECRC62 0.73 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.88 BNILDI_05070 metR HTH-type transcriptional regulator MetR low > 75
Enterobacter sp. TBS_079 0.73 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.87 MPMX20_04452 HTH-type transcriptional regulator MetR low > 85
Escherichia coli BL21 0.73 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent 0.88 ECD_03707 methionine biosynthesis regulon transcriptional regulator low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_02809 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.88 OHPLBJKB_04223 HTH-type transcriptional regulator MetR low > 73
Escherichia coli Nissle 1917 0.73 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.88 ECOLIN_RS30005 HTH-type transcriptional regulator MetR — —
Escherichia coli ECRC99 0.73 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.88 KEDOAH_13820 metR HTH-type transcriptional regulator MetR — —
Escherichia coli ECRC100 0.73 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.88 OKFHMN_14330 metR HTH-type transcriptional regulator MetR low > 80
Escherichia coli ECRC102 0.73 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.88 NIAGMN_12085 metR HTH-type transcriptional regulator MetR — —
Escherichia coli ECOR38 0.73 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.88 HEPCGN_13030 metR HTH-type transcriptional regulator MetR low > 87
Escherichia coli ECRC101 0.73 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.88 MCAODC_04835 metR HTH-type transcriptional regulator MetR low > 87
Escherichia fergusonii Becca 0.73 EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.88 EFB2_04809 HTH-type transcriptional regulator MetR low > 86
Escherichia coli ECRC98 0.72 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.88 JDDGAC_17955 metR HTH-type transcriptional regulator MetR low > 86
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB 0.85 EX28DRAFT_4493 Transcriptional regulator low > 76
Escherichia coli BW25113 0.72 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) 0.88 b3828 metR DNA-binding transcriptional activator, homocysteine-binding (NCBI) low > 76
Escherichia coli ECOR27 0.72 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.88 NOLOHH_06460 metR HTH-type transcriptional regulator MetR low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) 0.85 GFF253 Transcriptional activator MetR low > 78
Klebsiella michiganensis M5al 0.70 BWI76_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase 0.81 BWI76_RS01275 LysR family transcriptional regulator low > 92
Erwinia tracheiphila SCR3 0.65 LU632_RS09660 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.83 LU632_RS24035 metR HTH-type transcriptional regulator MetR low > 74
Shewanella oneidensis MR-1 0.54 SO0980 RNA methyltransferase, TrmA family (NCBI ptt file) 0.38 SO0817 metR transcriptional activator protein MetR (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.53 Shew_0801 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.35 Shew_2987 LysR family transcriptional regulator (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.57 CSW01_08580 HTH-type transcriptional regulator MetR low > 62
Shewanella sp. ANA-3 0.53 Shewana3_3309 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.38 Shewana3_3470 LysR family transcriptional regulator (RefSeq) low > 73
Shewanella amazonensis SB2B 0.51 Sama_0630 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.37 Sama_2628 transcriptional activator protein MetR (RefSeq) low > 62

Not shown: 0 genomes with orthologs for HER17_RS12475 only; 37 genomes with orthologs for HER17_RS20690 only