Conservation of cofitness between HER17_RS14920 and HER17_RS20175 in Pectobacterium carotovorum WPP14

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS14920 ADP-forming succinate--CoA ligase subunit beta 1.0 HER17_RS20175 RNase E specificity factor CsrD 0.56 20
Dickeya dadantii 3937 0.93 DDA3937_RS06470 ADP-forming succinate--CoA ligase subunit beta 0.71 DDA3937_RS01425 RNase E specificity factor CsrD — —
Dickeya dianthicola ME23 0.92 DZA65_RS06855 ADP-forming succinate--CoA ligase subunit beta 0.72 DZA65_RS01405 RNase E specificity factor CsrD low > 75
Dickeya dianthicola 67-19 0.92 HGI48_RS06510 ADP-forming succinate--CoA ligase subunit beta 0.72 HGI48_RS01345 RNase E specificity factor CsrD low > 71
Serratia liquefaciens MT49 0.91 IAI46_06285 ADP-forming succinate--CoA ligase subunit beta 0.62 IAI46_22725 RNase E specificity factor CsrD low > 86
Pantoea sp. MT58 0.91 IAI47_13735 ADP-forming succinate--CoA ligase subunit beta 0.49 IAI47_02430 RNase E specificity factor CsrD — —
Erwinia tracheiphila SCR3 0.90 LU632_RS16085 sucC ADP-forming succinate--CoA ligase subunit beta 0.51 LU632_RS21455 csrD RNase E specificity factor CsrD — —
Klebsiella michiganensis M5al 0.90 BWI76_RS08425 succinyl-CoA ligase subunit beta 0.53 BWI76_RS25505 RNase E specificity factor CsrD low > 92
Escherichia fergusonii Becca 0.90 EFB2_03378 Succinate--CoA ligase [ADP-forming] subunit beta 0.54 EFB2_00579 RNase E specificity factor CsrD low > 86
Escherichia coli BL21 0.90 ECD_00687 succinyl-CoA synthetase, beta subunit 0.53 ECD_03111 targeting factor for csrBC sRNA degradation low > 61
Escherichia coli ECRC102 0.90 NIAGMN_04965 sucC ADP-forming succinate--CoA ligase subunit beta 0.54 NIAGMN_15480 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC62 0.90 BNILDI_21300 sucC ADP-forming succinate--CoA ligase subunit beta 0.54 BNILDI_02015 csrD RNase E specificity factor CsrD low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_02989 Succinate--CoA ligase [ADP-forming] subunit beta 0.53 OHPLBJKB_00453 RNase E specificity factor CsrD low > 73
Escherichia coli ECOR38 0.90 HEPCGN_01315 sucC ADP-forming succinate--CoA ligase subunit beta 0.54 HEPCGN_16585 csrD RNase E specificity factor CsrD low > 87
Escherichia coli ECRC98 0.90 JDDGAC_10570 sucC ADP-forming succinate--CoA ligase subunit beta 0.54 JDDGAC_21345 csrD RNase E specificity factor CsrD low > 86
Escherichia coli BW25113 0.90 b0728 sucC succinyl-CoA synthetase subunit beta (NCBI) 0.53 b3252 yhdA conserved inner membrane protein (NCBI) low > 76
Escherichia coli ECRC101 0.90 MCAODC_26135 sucC ADP-forming succinate--CoA ligase subunit beta 0.54 MCAODC_08240 csrD RNase E specificity factor CsrD low > 87
Escherichia coli ECRC99 0.90 KEDOAH_21050 sucC ADP-forming succinate--CoA ligase subunit beta 0.54 KEDOAH_10430 csrD RNase E specificity factor CsrD — —
Escherichia coli Nissle 1917 0.90 ECOLIN_RS03880 ADP-forming succinate--CoA ligase subunit beta 0.54 ECOLIN_RS18635 RNase E specificity factor CsrD — —
Escherichia coli ECRC100 0.90 OKFHMN_06915 sucC ADP-forming succinate--CoA ligase subunit beta 0.54 OKFHMN_17720 csrD RNase E specificity factor CsrD low > 80
Escherichia coli ECOR27 0.90 NOLOHH_23305 sucC ADP-forming succinate--CoA ligase subunit beta 0.54 NOLOHH_09505 csrD RNase E specificity factor CsrD low > 75
Rahnella sp. WP5 0.89 EX31_RS23450 ADP-forming succinate--CoA ligase subunit beta 0.54 EX31_RS12230 RNase E specificity factor CsrD low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF4641 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.52 GFF2133 RNase E specificity factor CsrD low > 78
Enterobacter sp. TBS_079 0.88 MPMX20_01356 Succinate--CoA ligase [ADP-forming] subunit beta 0.53 MPMX20_04158 RNase E specificity factor CsrD low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_2264 succinyl-CoA synthetase, beta subunit 0.54 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain low > 76
Shewanella amazonensis SB2B 0.77 Sama_1429 sucC succinyl-CoA synthetase subunit beta (RefSeq) 0.20 Sama_0449 regulatory protein CsrD (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.77 CSW01_10420 succinyl-CoA ligase subunit beta 0.27 CSW01_02100 RNase E specificity factor CsrD low > 62
Shewanella sp. ANA-3 0.76 Shewana3_1712 sucC succinyl-CoA synthetase subunit beta (RefSeq) 0.21 Shewana3_3668 regulatory protein CsrD (RefSeq) — —
Shewanella oneidensis MR-1 0.75 SO1932 sucC succinyl-CoA synthase, beta subunit (NCBI ptt file) 0.21 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) — —
Shewanella loihica PV-4 0.75 Shew_1657 sucC succinyl-CoA synthetase subunit beta (RefSeq) 0.19 Shew_0384 regulatory protein CsrD (RefSeq) low > 60

Not shown: 66 genomes with orthologs for HER17_RS14920 only; 0 genomes with orthologs for HER17_RS20175 only