Conservation of cofitness between HER17_RS12475 and HER17_RS18130 in Pectobacterium carotovorum WPP14

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 1.0 HER17_RS18130 thymidine phosphorylase 0.66 19
Dickeya dianthicola 67-19 0.79 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.82 HGI48_RS03315 thymidine phosphorylase low > 71
Dickeya dadantii 3937 0.79 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.83 DDA3937_RS03140 thymidine phosphorylase low > 74
Dickeya dianthicola ME23 0.78 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.82 DZA65_RS03310 thymidine phosphorylase low > 75
Serratia liquefaciens MT49 0.78 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.83 IAI46_02915 thymidine phosphorylase low > 86
Rahnella sp. WP5 0.75 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.83 EX31_RS04060 thymidine phosphorylase low > 89
Pantoea sp. MT58 0.74 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.81 IAI47_03405 thymidine phosphorylase low > 76
Escherichia coli ECRC62 0.73 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 BNILDI_08040 deoA thymidine phosphorylase low > 75
Escherichia coli BL21 0.73 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent 0.80 ECD_04258 thymidine phosphorylase low > 61
Enterobacter sp. TBS_079 0.73 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.82 MPMX20_00681 Thymidine phosphorylase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_02809 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 OHPLBJKB_03679 Thymidine phosphorylase low > 73
Escherichia coli ECRC100 0.73 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 OKFHMN_11225 deoA thymidine phosphorylase low > 80
Escherichia coli ECRC101 0.73 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 MCAODC_01740 deoA thymidine phosphorylase low > 87
Escherichia coli ECRC102 0.73 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.79 NIAGMN_09075 deoA thymidine phosphorylase — —
Escherichia fergusonii Becca 0.73 EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 EFB2_04064 Thymidine phosphorylase low > 86
Escherichia coli ECRC99 0.73 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 KEDOAH_16925 deoA thymidine phosphorylase — —
Escherichia coli ECOR38 0.73 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 HEPCGN_09230 deoA thymidine phosphorylase low > 87
Escherichia coli Nissle 1917 0.73 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 ECOLIN_RS25155 thymidine phosphorylase low > 55
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB 0.82 EX28DRAFT_3591 thymidine phosphorylase (EC 2.4.2.4) low > 76
Escherichia coli ECRC98 0.72 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 JDDGAC_14820 deoA thymidine phosphorylase low > 86
Escherichia coli ECOR27 0.72 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 NOLOHH_03555 deoA thymidine phosphorylase low > 75
Escherichia coli BW25113 0.72 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) 0.80 b4382 deoA thymidine phosphorylase (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) 0.80 GFF1044 Thymidine phosphorylase (EC 2.4.2.4) low > 78
Klebsiella michiganensis M5al 0.70 BWI76_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase 0.82 BWI76_RS04135 thymidine phosphorylase low > 92
Shewanella oneidensis MR-1 0.54 SO0980 RNA methyltransferase, TrmA family (NCBI ptt file) 0.68 SO1218 deoA thymidine phosphorylase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.53 Shew_0801 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.67 Shew_2814 deoA thymidine phosphorylase (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.67 CSW01_11905 thymidine phosphorylase low > 62
Shewanella sp. ANA-3 0.53 Shewana3_3309 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.67 Shewana3_1042 deoA thymidine phosphorylase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.51 Sama_0630 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.68 Sama_0974 deoA thymidine phosphorylase (RefSeq) low > 62

Not shown: 1 genomes with orthologs for HER17_RS12475 only; 11 genomes with orthologs for HER17_RS18130 only