Conservation of cofitness between HER17_RS12475 and HER17_RS17885 in Pectobacterium carotovorum WPP14

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 1.0 HER17_RS17885 bifunctional protein-disulfide isomerase/oxidoreductase DsbC 0.72 3
Dickeya dianthicola 67-19 0.79 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.78 HGI48_RS03445 bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 71
Dickeya dadantii 3937 0.79 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.79 DDA3937_RS03305 bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 74
Dickeya dianthicola ME23 0.78 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.78 DZA65_RS03490 bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 75
Serratia liquefaciens MT49 0.78 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.78 IAI46_20725 bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 86
Rahnella sp. WP5 0.75 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.69 EX31_RS13475 bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 89
Pantoea sp. MT58 0.74 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.61 IAI47_03825 bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 76
Escherichia coli ECRC62 0.73 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.68 BNILDI_10030 dsbC bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_02809 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.68 OHPLBJKB_00822 Thiol:disulfide interchange protein DsbC low > 73
Enterobacter sp. TBS_079 0.73 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.71 MPMX20_03752 Thiol:disulfide interchange protein DsbC low > 85
Escherichia coli BL21 0.73 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent 0.68 ECD_02725 protein disulfide isomerase II low > 61
Escherichia coli ECRC101 0.73 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.68 MCAODC_10095 dsbC bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 87
Escherichia coli ECRC99 0.73 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.68 KEDOAH_08565 dsbC bifunctional protein-disulfide isomerase/oxidoreductase DsbC — —
Escherichia fergusonii Becca 0.73 EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.67 EFB2_01008 Thiol:disulfide interchange protein DsbC low > 86
Escherichia coli ECRC102 0.73 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.68 NIAGMN_17340 dsbC bifunctional protein-disulfide isomerase/oxidoreductase DsbC — —
Escherichia coli Nissle 1917 0.73 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.67 ECOLIN_RS16120 bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 55
Escherichia coli ECOR38 0.73 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.67 HEPCGN_18865 dsbC bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 87
Escherichia coli ECRC100 0.73 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.68 OKFHMN_19575 dsbC bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 80
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB 0.72 EX28DRAFT_2944 Protein-disulfide isomerase low > 76
Escherichia coli ECRC98 0.72 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.68 JDDGAC_23215 dsbC bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 86
Escherichia coli BW25113 0.72 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) 0.68 b2893 dsbC protein disulfide isomerase II (NCBI) low > 76
Escherichia coli ECOR27 0.72 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.68 NOLOHH_11500 dsbC bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) 0.69 GFF2990 Thiol:disulfide interchange protein DsbC low > 78
Klebsiella michiganensis M5al 0.70 BWI76_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase 0.68 BWI76_RS23810 bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 92
Erwinia tracheiphila SCR3 0.65 LU632_RS09660 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.68 LU632_RS05980 dsbC bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 74
Shewanella oneidensis MR-1 0.54 SO0980 RNA methyltransferase, TrmA family (NCBI ptt file) 0.45 SO0951 dsbC thiol:disulfide interchange protein DsbC (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.53 Shew_0801 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.44 Shew_0771 thiol:disulfide interchange protein DsbC (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.35 CSW01_12245 bifunctional protein-disulfide isomerase/oxidoreductase DsbC low > 62
Shewanella sp. ANA-3 0.53 Shewana3_3309 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.45 Shewana3_3330 thiol:disulfide interchange protein DsbC (RefSeq) low > 73
Shewanella amazonensis SB2B 0.51 Sama_0630 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.46 Sama_2738 thiol:disulfide interchange protein DsbC (RefSeq) low > 62

Not shown: 0 genomes with orthologs for HER17_RS12475 only; 30 genomes with orthologs for HER17_RS17885 only