Conservation of cofitness between HER17_RS12475 and HER17_RS12105 in Pectobacterium carotovorum WPP14

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 1.0 HER17_RS12105 ComEC family protein 0.67 18
Dickeya dianthicola 67-19 0.79 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.57 HGI48_RS09845 ComEC family protein low > 71
Dickeya dianthicola ME23 0.78 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.55 DZA65_RS10175 ComEC family protein low > 75
Serratia liquefaciens MT49 0.78 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.50 IAI46_08660 ComEC family protein low > 86
Rahnella sp. WP5 0.75 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.43 EX31_RS18230 DNA internalization-related competence protein ComEC/Rec2 low > 89
Pantoea sp. MT58 0.74 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.39 IAI47_12840 DNA internalization-related competence protein ComEC/Rec2 low > 76
Escherichia coli ECRC62 0.73 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.38 BNILDI_20275 ycaI ComEC family protein low > 75
Enterobacter sp. TBS_079 0.73 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.37 MPMX20_01571 hypothetical protein low > 85
Escherichia coli BL21 0.73 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent 0.38 ECD_00917 ComEC family inner membrane protein 0.52 44
Escherichia coli Nissle 1917 0.73 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.38 ECOLIN_RS04835 ComEC family protein low > 55
Escherichia coli ECOR38 0.73 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.38 HEPCGN_23065 ycaI ComEC family protein low > 87
Escherichia coli ECRC100 0.73 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.38 OKFHMN_05460 ycaI ComEC family protein low > 80
Escherichia coli ECRC102 0.73 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.38 NIAGMN_03180 ycaI ComEC family protein — —
Escherichia fergusonii Becca 0.73 EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.38 EFB2_03151 hypothetical protein low > 86
Escherichia coli ECRC99 0.73 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.38 KEDOAH_22275 ycaI ComEC family protein — —
Escherichia coli ECRC101 0.73 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.38 MCAODC_24850 ycaI ComEC family protein low > 87
Escherichia coli ECRC98 0.72 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.38 JDDGAC_09070 ycaI ComEC family protein low > 86
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB 0.37 EX28DRAFT_2023 DNA internalization-related competence protein ComEC/Rec2 low > 76
Escherichia coli ECOR27 0.72 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.38 NOLOHH_22020 ycaI ComEC family protein low > 75
Escherichia coli BW25113 0.72 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) 0.38 b0913 ycaI orf, hypothetical protein (VIMSS) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) 0.35 GFF3670 DNA internalization-related competence protein ComEC/Rec2 low > 78
Klebsiella michiganensis M5al 0.70 BWI76_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase 0.38 BWI76_RS09790 ComEC family protein low > 92
Erwinia tracheiphila SCR3 0.65 LU632_RS09660 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.47 LU632_RS09820 ComEC family protein low > 74
Shewanella oneidensis MR-1 0.54 SO0980 RNA methyltransferase, TrmA family (NCBI ptt file) 0.17 SO2803 DNA internalization-related competence protein ComEC/Rec2 (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.53 Shew_0801 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.17 Shew_1637 DNA internalization-related competence protein ComEC/Rec2 (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.20 CSW01_09415 DNA internalization-related competence protein ComEC/Rec2 low > 62
Shewanella sp. ANA-3 0.53 Shewana3_3309 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.18 Shewana3_2585 DNA internalization-related competence protein ComEC/Rec2 (RefSeq) low > 73
Shewanella amazonensis SB2B 0.51 Sama_0630 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.15 Sama_1336 DNA internalization-related competence protein ComEC/Rec2 (RefSeq) low > 62

Not shown: 2 genomes with orthologs for HER17_RS12475 only; 23 genomes with orthologs for HER17_RS12105 only