Conservation of cofitness between HER17_RS00910 and HER17_RS10930 in Pectobacterium carotovorum WPP14

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS00910 cystathionine gamma-synthase 1.0 HER17_RS10930 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF 0.97 17
Dickeya dianthicola 67-19 0.92 HGI48_RS20425 cystathionine gamma-synthase 0.72 HGI48_RS10470 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF low > 71
Dickeya dadantii 3937 0.92 DDA3937_RS00950 cystathionine gamma-synthase 0.74 DDA3937_RS10470 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF low > 74
Dickeya dianthicola ME23 0.92 DZA65_RS21470 cystathionine gamma-synthase 0.72 DZA65_RS10950 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF low > 75
Escherichia coli BW25113 0.87 b3939 metB cystathionine gamma-synthase (NCBI) 0.69 b1262 trpC N-(5-phosphoribosyl)anthranilate isomerase and indole-3-glycerolphosphate synthetase (VIMSS) 0.89 20
Klebsiella michiganensis M5al 0.87 BWI76_RS00785 cystathionine gamma-synthase 0.71 BWI76_RS11850 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 0.92 12
Escherichia coli ECOR27 0.87 NOLOHH_05820 metB cystathionine gamma-synthase 0.70 NOLOHH_20325 trpD bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD 0.90 46
Escherichia coli ECRC62 0.87 BNILDI_05715 metB cystathionine gamma-synthase 0.70 BNILDI_18470 trpD bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD 0.91 62
Escherichia coli HS(pFamp)R (ATCC 700891) 0.87 OHPLBJKB_04111 Cystathionine gamma-synthase 0.69 OHPLBJKB_02421 Tryptophan biosynthesis protein TrpCF low > 73
Escherichia coli BL21 0.87 ECD_03825 cystathionine gamma-synthase, PLP-dependent 0.70 ECD_01236 indole-3-glycerolphosphate synthetase and N-(5-phosphoribosyl)anthranilate isomerase 0.65 59
Escherichia coli Nissle 1917 0.87 ECOLIN_RS22725 cystathionine gamma-synthase 0.70 ECOLIN_RS07605 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF low > 55
Enterobacter asburiae PDN3 0.87 EX28DRAFT_4411 cystathionine gamma-synthase (EC 2.5.1.48) 0.70 EX28DRAFT_0934 indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.55 75
Escherichia coli ECOR38 0.87 HEPCGN_12345 metB cystathionine gamma-synthase 0.70 HEPCGN_25525 trpCF bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF 0.81 73
Escherichia fergusonii Becca 0.87 EFB2_04679 Cystathionine gamma-synthase 0.70 EFB2_02664 Tryptophan biosynthesis protein TrpCF low > 86
Enterobacter sp. TBS_079 0.87 MPMX20_04531 Cystathionine gamma-synthase 0.70 MPMX20_02512 Tryptophan biosynthesis protein TrpCF 0.91 29
Escherichia coli ECRC98 0.87 JDDGAC_17300 metB cystathionine gamma-synthase 0.69 JDDGAC_05210 trpCF bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF 0.93 25
Escherichia coli ECRC100 0.87 OKFHMN_13675 metB cystathionine gamma-synthase 0.69 OKFHMN_02665 trpCF bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF low > 80
Escherichia coli ECRC101 0.87 MCAODC_04175 metB cystathionine gamma-synthase 0.69 MCAODC_15600 trpCF bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF 0.87 36
Escherichia coli ECRC99 0.87 KEDOAH_14485 metB cystathionine gamma-synthase 0.69 KEDOAH_26085 trpCF bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF — —
Escherichia coli ECRC102 0.87 NIAGMN_11430 metB cystathionine gamma-synthase 0.69 NIAGMN_26835 trpCF bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF2323 Cystathionine gamma-synthase (EC 2.5.1.48) 0.69 GFF2724 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24) low > 78
Erwinia tracheiphila SCR3 0.85 LU632_RS19640 metB cystathionine gamma-synthase 0.69 LU632_RS12765 trpCF bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF low > 74
Serratia liquefaciens MT49 0.84 IAI46_24540 cystathionine gamma-synthase 0.72 IAI46_14035 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF low > 86
Pantoea sp. MT58 0.79 IAI47_00880 cystathionine gamma-synthase 0.71 IAI47_09175 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF 0.96 22
Rahnella sp. WP5 0.77 EX31_RS14215 cystathionine gamma-synthase 0.72 EX31_RS09970 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF 0.97 23
Shewanella amazonensis SB2B 0.61 Sama_3171 cystathionine gamma-synthase (RefSeq) 0.47 Sama_2132 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (RefSeq) 0.92 48
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_13550 O-succinylhomoserine (thiol)-lyase 0.61 CSW01_05935 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase low > 62
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_2459 cystathionine gamma-synthase (EC 2.5.1.48) 0.35 B158DRAFT_2428 indole-3-glycerol phosphate synthase (EC 4.1.1.48) low > 40
Shewanella loihica PV-4 0.60 Shew_0520 O-succinylhomoserine (thiol)-lyase (RefSeq) 0.47 Shew_2254 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (RefSeq) 0.89 49
Shewanella sp. ANA-3 0.59 Shewana3_3614 cystathionine gamma-synthase (RefSeq) 0.42 Shewana3_1517 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (RefSeq) 0.93 25
Shewanella oneidensis MR-1 0.58 SO4056 metB cystathionine gamma-synthase (NCBI ptt file) 0.40 SO3022 trpC/F indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (NCBI ptt file) 0.90 48

Not shown: 11 genomes with orthologs for HER17_RS00910 only; 1 genomes with orthologs for HER17_RS10930 only