Conservation of cofitness between HER17_RS21350 and HER17_RS04435 in Pectobacterium carotovorum WPP14

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS21350 EAL domain-containing protein 1.0 HER17_RS04435 DTW domain-containing protein 0.54 19
Pantoea sp. MT58 0.45 IAI47_01435 EAL domain-containing protein 0.63 IAI47_04480 DTW domain-containing protein low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF4237 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.56 GFF2097 hypothetical protein low > 78
Escherichia coli ECRC98 0.30 JDDGAC_08140 eAL EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) 0.59 JDDGAC_24990 tapT tRNA-uridine aminocarboxypropyltransferase low > 86
Escherichia coli ECRC99 0.30 KEDOAH_23215 eAL EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) 0.59 KEDOAH_06895 tapT tRNA-uridine aminocarboxypropyltransferase — —
Escherichia coli ECRC102 0.30 NIAGMN_23805 eAL EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) 0.59 NIAGMN_19095 tapT tRNA-uridine aminocarboxypropyltransferase — —
Escherichia coli ECRC101 0.30 MCAODC_23905 eAL EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) 0.59 MCAODC_11855 tapT tRNA-uridine aminocarboxypropyltransferase low > 87
Escherichia coli ECRC100 0.30 OKFHMN_04530 eAL EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) 0.59 OKFHMN_21325 tapT tRNA-uridine aminocarboxypropyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.21 Pf1N1B4_5006 Rtn protein 0.42 Pf1N1B4_3148 FIG074102: hypothetical protein low > 87
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_452 Rtn protein 0.37 Pf6N2E2_2987 FIG074102: hypothetical protein low > 103
Enterobacter sp. TBS_079 0.21 MPMX20_02720 putative cyclic di-GMP phosphodiesterase PdeD 0.54 MPMX20_03452 hypothetical protein low > 85
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_2932 Rtn protein 0.43 PfGW456L13_4663 FIG074102: hypothetical protein low > 87
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS14595 EAL domain-containing protein 0.41 PFLU_RS05905 DTW domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.21 PFLU_RS14595 EAL domain-containing protein 0.41 PFLU_RS05905 DTW domain-containing protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_22830 diguanylate phosphodiesterase 0.42 AO356_05645 hypothetical protein low > 104
Klebsiella michiganensis M5al 0.21 BWI76_RS17880 c-di-GMP phosphodiesterase 0.56 BWI76_RS21395 DTW domain-containing protein low > 92
Pseudomonas simiae WCS417 0.20 PS417_14020 diguanylate phosphodiesterase 0.41 PS417_05835 hypothetical protein low > 88
Enterobacter asburiae PDN3 0.20 EX28DRAFT_1790 FOG: EAL domain 0.55 EX28DRAFT_0064 Uncharacterized conserved protein low > 76
Serratia liquefaciens MT49 0.20 IAI46_14800 EAL domain-containing protein 0.61 IAI46_20020 DTW domain-containing protein low > 86
Escherichia fergusonii Becca 0.20 EFB2_01680 putative cyclic di-GMP phosphodiesterase PdeN 0.58 EFB2_01313 hypothetical protein low > 86
Escherichia coli ECRC62 0.20 BNILDI_13890 pdeN cyclic di-GMP phosphodiesterase 0.59 BNILDI_11800 tapT tRNA-uridine aminocarboxypropyltransferase low > 75
Escherichia coli BW25113 0.20 b2176 rtn hypothetical protein (NCBI) 0.59 b2583 yfiP orf, hypothetical protein (VIMSS) low > 76
Escherichia coli Nissle 1917 0.20 ECOLIN_RS12725 cyclic di-GMP phosphodiesterase 0.58 ECOLIN_RS14620 tRNA-uridine aminocarboxypropyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.20 OHPLBJKB_01533 putative cyclic di-GMP phosphodiesterase PdeN 0.59 OHPLBJKB_01123 hypothetical protein low > 73
Escherichia coli ECOR27 0.20 NOLOHH_14970 pdeN cyclic di-GMP phosphodiesterase 0.58 NOLOHH_12995 tapT tRNA-uridine aminocarboxypropyltransferase low > 75
Escherichia coli ECOR38 0.20 HEPCGN_22660 pdeN cyclic di-GMP phosphodiesterase 0.59 HEPCGN_20450 tapT tRNA-uridine aminocarboxypropyltransferase low > 87
Escherichia coli BL21 0.20 ECD_02106 resistance protein for phages lambda and N4, putative membrane-anchored cyclic-di-GMP phosphodiesterase 0.58 ECD_02477 DTW domain protein low > 61
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_26940 diguanylate phosphodiesterase 0.43 AO353_16830 hypothetical protein low > 101
Shewanella oneidensis MR-1 0.19 SO3821 rtn protein (NCBI ptt file) 0.39 SO2387 conserved hypothetical protein (NCBI ptt file) low > 76
Pseudomonas putida KT2440 0.19 PP_3435 conserved protein of unknown function 0.42 PP_1634 conserved protein low > 96
Dickeya dadantii 3937 0.18 DDA3937_RS13005 EAL domain-containing protein 0.72 DDA3937_RS16780 DTW domain-containing protein low > 74
Dickeya dianthicola ME23 0.18 DZA65_RS13535 EAL domain-containing protein 0.73 DZA65_RS17925 DTW domain-containing protein low > 75
Dickeya dianthicola 67-19 0.17 HGI48_RS13070 EAL domain-containing protein 0.73 HGI48_RS16850 DTW domain-containing protein low > 71

Not shown: 4 genomes with orthologs for HER17_RS21350 only; 15 genomes with orthologs for HER17_RS04435 only