Conservation of cofitness between HER17_RS12475 and HER17_RS03100 in Pectobacterium carotovorum WPP14

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 1.0 HER17_RS03100 acetolactate synthase small subunit 0.71 4
Dickeya dianthicola 67-19 0.79 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.93 HGI48_RS18035 acetolactate synthase small subunit low > 71
Dickeya dadantii 3937 0.79 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.94 DDA3937_RS18100 acetolactate synthase small subunit low > 74
Dickeya dianthicola ME23 0.78 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.93 DZA65_RS19180 acetolactate synthase small subunit low > 75
Serratia liquefaciens MT49 0.78 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.97 IAI46_03380 acetolactate synthase small subunit low > 86
Rahnella sp. WP5 0.75 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.92 EX31_RS03660 acetolactate synthase small subunit low > 89
Pantoea sp. MT58 0.74 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.93 IAI47_15985 acetolactate synthase small subunit low > 76
Escherichia coli ECRC62 0.73 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.92 BNILDI_08570 ilvN acetolactate synthase small subunit low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_02809 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.92 OHPLBJKB_03580 Acetolactate synthase isozyme 3 small subunit low > 73
Escherichia coli BL21 0.73 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent 0.91 ECD_00080 acetolactate synthase 3, small subunit, valine-sensitive low > 61
Enterobacter sp. TBS_079 0.73 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.91 MPMX20_00772 Acetolactate synthase isozyme 3 small subunit low > 85
Escherichia coli ECRC101 0.73 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.92 MCAODC_01210 ilvN acetolactate synthase small subunit low > 87
Escherichia coli ECRC99 0.73 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.92 KEDOAH_17460 ilvN acetolactate synthase small subunit — —
Escherichia coli ECOR38 0.73 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.92 HEPCGN_08675 ilvN acetolactate synthase small subunit low > 87
Escherichia coli ECRC100 0.73 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.92 OKFHMN_10695 ilvN acetolactate synthase small subunit low > 80
Escherichia coli ECRC102 0.73 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.92 NIAGMN_08545 ilvN acetolactate synthase small subunit — —
Escherichia fergusonii Becca 0.73 EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.92 EFB2_03968 Acetolactate synthase isozyme 3 small subunit low > 86
Escherichia coli Nissle 1917 0.73 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.92 ECOLIN_RS00420 acetolactate synthase small subunit low > 55
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB 0.91 EX28DRAFT_3674 acetolactate synthase, small subunit (EC 2.2.1.6) low > 76
Escherichia coli ECRC98 0.72 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.92 JDDGAC_14290 ilvN acetolactate synthase small subunit low > 86
Escherichia coli ECOR27 0.72 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.92 NOLOHH_03040 ilvN acetolactate synthase small subunit low > 75
Escherichia coli BW25113 0.72 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) 0.91 b0078 ilvH acetolactate synthase small subunit (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) 0.92 GFF160 Acetolactate synthase small subunit (EC 2.2.1.6) low > 78
Klebsiella michiganensis M5al 0.70 BWI76_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase 0.90 BWI76_RS04700 acetolactate synthase small subunit low > 92
Erwinia tracheiphila SCR3 0.65 LU632_RS09660 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.93 LU632_RS02890 ilvN acetolactate synthase small subunit low > 74
Shewanella oneidensis MR-1 0.54 SO0980 RNA methyltransferase, TrmA family (NCBI ptt file) 0.75 SO2278 ilvH acetolactate synthase III, small subunit (NCBI ptt file) — —
Shewanella loihica PV-4 0.53 Shew_0801 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.77 Shew_1775 acetolactate synthase 3 regulatory subunit (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.73 CSW01_12560 acetolactate synthase small subunit low > 62
Shewanella sp. ANA-3 0.53 Shewana3_3309 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.75 Shewana3_2270 ilvH acetolactate synthase 3 regulatory subunit (RefSeq) low > 73
Shewanella amazonensis SB2B 0.51 Sama_0630 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.76 Sama_2019 ilvH acetolactate synthase 3 regulatory subunit (RefSeq) low > 62

Not shown: 0 genomes with orthologs for HER17_RS12475 only; 57 genomes with orthologs for HER17_RS03100 only