Conservation of cofitness between HER17_RS12475 and HER17_RS01095 in Pectobacterium carotovorum WPP14

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 1.0 HER17_RS01095 HTH-type transcriptional activator IlvY 0.67 17
Dickeya dadantii 3937 0.79 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 DDA3937_RS20135 HTH-type transcriptional activator IlvY low > 74
Dickeya dianthicola 67-19 0.79 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 HGI48_RS20275 HTH-type transcriptional activator IlvY low > 71
Dickeya dianthicola ME23 0.78 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 DZA65_RS21315 HTH-type transcriptional activator IlvY low > 75
Serratia liquefaciens MT49 0.78 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.75 IAI46_24330 HTH-type transcriptional activator IlvY low > 86
Rahnella sp. WP5 0.75 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.78 EX31_RS15015 HTH-type transcriptional activator IlvY low > 89
Pantoea sp. MT58 0.74 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 IAI47_01045 HTH-type transcriptional activator IlvY low > 76
Escherichia coli ECRC62 0.73 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 BNILDI_04760 ilvY HTH-type transcriptional activator IlvY low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_02809 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 OHPLBJKB_04280 HTH-type transcriptional regulator GltC low > 73
Escherichia coli BL21 0.73 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent 0.72 ECD_03651 transcriptional activator of ilvC; autorepressor low > 61
Enterobacter sp. TBS_079 0.73 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 MPMX20_04497 HTH-type transcriptional regulator GltC low > 85
Escherichia coli Nissle 1917 0.73 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 ECOLIN_RS21675 HTH-type transcriptional activator IlvY low > 55
Escherichia coli ECRC100 0.73 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 OKFHMN_14630 ilvY HTH-type transcriptional activator IlvY low > 80
Escherichia coli ECRC99 0.73 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 KEDOAH_13520 ilvY HTH-type transcriptional activator IlvY — —
Escherichia fergusonii Becca 0.73 EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 EFB2_04863 HTH-type transcriptional regulator HdfR low > 86
Escherichia coli ECOR38 0.73 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 HEPCGN_13340 ilvY HTH-type transcriptional activator IlvY low > 87
Escherichia coli ECRC102 0.73 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 NIAGMN_12385 ilvY HTH-type transcriptional activator IlvY — —
Escherichia coli ECRC101 0.73 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 MCAODC_05135 ilvY HTH-type transcriptional activator IlvY low > 87
Escherichia coli ECRC98 0.72 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 JDDGAC_18250 ilvY HTH-type transcriptional activator IlvY low > 86
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB 0.72 EX28DRAFT_4445 Transcriptional regulator low > 76
Escherichia coli BW25113 0.72 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) 0.72 b3773 ilvY DNA-binding transcriptional dual regulator (NCBI) low > 76
Escherichia coli ECOR27 0.72 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 NOLOHH_06765 ilvY HTH-type transcriptional activator IlvY low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) 0.71 GFF2897 HTH-type transcriptional regulator IlvY low > 78
Klebsiella michiganensis M5al 0.70 BWI76_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase 0.70 BWI76_RS00985 transcriptional regulator IlvY low > 92
Erwinia tracheiphila SCR3 0.65 LU632_RS09660 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.78 LU632_RS24390 ilvY HTH-type transcriptional activator IlvY 0.55 16
Shewanella oneidensis MR-1 0.54 SO0980 RNA methyltransferase, TrmA family (NCBI ptt file) 0.54 SO4350 ilvY transcriptional regulator ilvY (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.53 Shew_0801 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.53 Shew_0287 DNA-binding transcriptional regulator IlvY (RefSeq) 0.48 31
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.47 CSW01_00835 HTH-type transcriptional activator IlvY low > 62
Shewanella sp. ANA-3 0.53 Shewana3_3309 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.54 Shewana3_0354 DNA-binding transcriptional regulator IlvY (RefSeq) low > 73
Shewanella amazonensis SB2B 0.51 Sama_0630 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.50 Sama_3283 DNA-binding transcriptional regulator IlvY (RefSeq) low > 62

Not shown: 0 genomes with orthologs for HER17_RS12475 only; 2 genomes with orthologs for HER17_RS01095 only