Conservation of cofitness between HER17_RS04235 and HER17_RS01095 in Pectobacterium carotovorum WPP14

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS04235 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 1.0 HER17_RS01095 HTH-type transcriptional activator IlvY 0.93 15
Dickeya dadantii 3937 0.80 DDA3937_RS16945 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.80 DDA3937_RS20135 HTH-type transcriptional activator IlvY 0.77 60
Dickeya dianthicola 67-19 0.79 HGI48_RS17015 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.80 HGI48_RS20275 HTH-type transcriptional activator IlvY low > 71
Dickeya dianthicola ME23 0.79 DZA65_RS18090 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.80 DZA65_RS21315 HTH-type transcriptional activator IlvY low > 75
Serratia liquefaciens MT49 0.78 IAI46_03685 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.75 IAI46_24330 HTH-type transcriptional activator IlvY low > 86
Pantoea sp. MT58 0.78 IAI47_04150 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.72 IAI47_01045 HTH-type transcriptional activator IlvY 0.75 65
Rahnella sp. WP5 0.77 EX31_RS07905 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.78 EX31_RS15015 HTH-type transcriptional activator IlvY 0.90 48
Enterobacter asburiae PDN3 0.77 EX28DRAFT_2853 sulfite reductase [NADPH] flavoprotein, alpha-component 0.72 EX28DRAFT_4445 Transcriptional regulator 0.60 66
Escherichia coli ECRC62 0.75 BNILDI_10735 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.72 BNILDI_04760 ilvY HTH-type transcriptional activator IlvY 0.97 30
Escherichia coli ECOR27 0.75 NOLOHH_12185 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.72 NOLOHH_06765 ilvY HTH-type transcriptional activator IlvY 0.93 32
Escherichia coli BW25113 0.75 b2764 cysJ sulfite reductase, alpha subunit, flavoprotein (NCBI) 0.72 b3773 ilvY DNA-binding transcriptional dual regulator (NCBI) 0.87 51
Enterobacter sp. TBS_079 0.75 MPMX20_03643 Sulfite reductase [NADPH] flavoprotein alpha-component 0.72 MPMX20_04497 HTH-type transcriptional regulator GltC 0.65 10
Escherichia coli BL21 0.75 ECD_02609 sulfite reductase, alpha subunit, flavoprotein 0.72 ECD_03651 transcriptional activator of ilvC; autorepressor 0.66 53
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_00969 Sulfite reductase [NADPH] flavoprotein alpha-component 0.72 OHPLBJKB_04280 HTH-type transcriptional regulator GltC 0.44 60
Escherichia coli Nissle 1917 0.75 ECOLIN_RS15410 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.72 ECOLIN_RS21675 HTH-type transcriptional activator IlvY 0.81 26
Escherichia fergusonii Becca 0.75 EFB2_01153 Sulfite reductase [NADPH] flavoprotein alpha-component 0.72 EFB2_04863 HTH-type transcriptional regulator HdfR low > 86
Escherichia coli ECOR38 0.75 HEPCGN_19095 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.72 HEPCGN_13340 ilvY HTH-type transcriptional activator IlvY 0.96 26
Klebsiella michiganensis M5al 0.74 BWI76_RS22765 sulfite reductase subunit alpha 0.70 BWI76_RS00985 transcriptional regulator IlvY 0.78 51
Escherichia coli ECRC99 0.74 KEDOAH_07755 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.72 KEDOAH_13520 ilvY HTH-type transcriptional activator IlvY — —
Escherichia coli ECRC101 0.74 MCAODC_10895 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.72 MCAODC_05135 ilvY HTH-type transcriptional activator IlvY 0.63 79
Escherichia coli ECRC100 0.74 OKFHMN_20370 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.72 OKFHMN_14630 ilvY HTH-type transcriptional activator IlvY 0.99 10
Escherichia coli ECRC98 0.74 JDDGAC_24035 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.72 JDDGAC_18250 ilvY HTH-type transcriptional activator IlvY 0.84 25
Escherichia coli ECRC102 0.74 NIAGMN_18140 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.72 NIAGMN_12385 ilvY HTH-type transcriptional activator IlvY — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF4820 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) 0.71 GFF2897 HTH-type transcriptional regulator IlvY low > 78
Erwinia tracheiphila SCR3 0.73 LU632_RS06400 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.78 LU632_RS24390 ilvY HTH-type transcriptional activator IlvY low > 74
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_02010 assimilatory sulfite reductase (NADPH) flavoprotein subunit 0.47 CSW01_00835 HTH-type transcriptional activator IlvY low > 62
Shewanella amazonensis SB2B 0.49 Sama_2839 sulfite reductase subunit alpha (RefSeq) 0.50 Sama_3283 DNA-binding transcriptional regulator IlvY (RefSeq) low > 62
Shewanella oneidensis MR-1 0.49 SO3738 cysJ sulfite reductase (NADPH) flavoprotein alpha-component (NCBI ptt file) 0.54 SO4350 ilvY transcriptional regulator ilvY (NCBI ptt file) 0.89 64
Shewanella loihica PV-4 0.49 Shew_0665 sulfite reductase (NADPH) flavoprotein, alpha chain (RefSeq) 0.53 Shew_0287 DNA-binding transcriptional regulator IlvY (RefSeq) 0.90 36
Shewanella sp. ANA-3 0.48 Shewana3_0855 sulfite reductase (NADPH) alpha subunit (RefSeq) 0.54 Shewana3_0354 DNA-binding transcriptional regulator IlvY (RefSeq) 0.96 7
Alteromonas macleodii MIT1002 0.47 MIT1002_03380 Sulfite reductase [NADPH] flavoprotein alpha-component 0.41 MIT1002_04044 HTH-type transcriptional regulator GltC — —

Not shown: 12 genomes with orthologs for HER17_RS04235 only; 1 genomes with orthologs for HER17_RS01095 only