Conservation of cofitness between HEPCGN_04840 and HEPCGN_25875 in Escherichia coli ECOR38

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR38 1.0 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.0 HEPCGN_25875 ycjX Uncharacterized protein YcjX 0.54 13
Escherichia coli ECOR27 0.99 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 NOLOHH_20010 ycjX Uncharacterized protein YcjX — —
Escherichia coli ECRC62 0.99 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 BNILDI_18160 ycjX Uncharacterized protein YcjX low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F 0.99 OHPLBJKB_02361 putative protein YcjX low > 73
Escherichia coli BL21 0.98 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent 0.99 ECD_01298 DUF463 family protein, putative P-loop NTPase — —
Escherichia coli BW25113 0.98 b1835 yebU putative nucleolar proteins (VIMSS) 0.99 b1321 ycjX conserved protein with nucleoside triphosphate hydrolase domain (NCBI) low > 76
Escherichia coli Nissle 1917 0.98 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 ECOLIN_RS07935 YcjX family protein — —
Escherichia fergusonii Becca 0.98 EFB2_02166 Ribosomal RNA small subunit methyltransferase F 1.00 EFB2_02606 putative protein YcjX low > 86
Escherichia coli ECRC101 0.98 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 MCAODC_15955 ycjX Uncharacterized protein YcjX low > 87
Escherichia coli ECRC99 0.98 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 KEDOAH_26460 ycjX Uncharacterized protein YcjX — —
Escherichia coli ECRC98 0.98 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.99 JDDGAC_04860 ycjX Uncharacterized protein YcjX low > 86
Escherichia coli ECRC100 0.98 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 OKFHMN_02315 ycjX Uncharacterized protein YcjX — —
Escherichia coli ECRC102 0.98 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 NIAGMN_26485 ycjX Uncharacterized protein YcjX — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) 0.95 GFF2681 Conserved protein YcjX with nucleoside triphosphate hydrolase domain low > 78
Enterobacter asburiae PDN3 0.81 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase 0.94 EX28DRAFT_0992 Predicted ATPase low > 76
Enterobacter sp. TBS_079 0.79 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F 0.94 MPMX20_02456 putative protein YcjX low > 85
Klebsiella michiganensis M5al 0.77 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.93 BWI76_RS12475 hypothetical protein low > 92
Pantoea sp. MT58 0.70 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.82 IAI47_09415 YcjX family protein low > 76
Serratia liquefaciens MT49 0.69 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.85 IAI46_13480 YcjX family protein low > 86
Rahnella sp. WP5 0.67 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.82 EX31_RS15665 YcjX family protein low > 89
Pectobacterium carotovorum WPP14 0.67 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.81 HER17_RS09560 YcjX family protein low > 75
Dickeya dadantii 3937 0.66 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.75 DDA3937_RS12410 YcjX family protein low > 74
Dickeya dianthicola ME23 0.65 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.75 DZA65_RS12930 YcjX family protein low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.75 HGI48_RS12480 YcjX family protein low > 71
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.53 CSW01_06595 nucleoside triphosphate hydrolase low > 62
Shewanella sp. ANA-3 0.51 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.41 Shewana3_2645 protein of unknown function DUF463, YcjX family protein (RefSeq) low > 73
Shewanella loihica PV-4 0.51 Shew_1583 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.42 Shew_2493 protein of unknown function DUF463, YcjX family protein (RefSeq) low > 60
Shewanella oneidensis MR-1 0.50 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) 0.41 SO1810 hypothetical ATPase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.48 Sama_2039 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.43 Sama_1240 ATPase (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_0839 NOL1/NOP2/sun family putative RNA methylase 0.37 B158DRAFT_1056 Predicted ATPase low > 40

Not shown: 7 genomes with orthologs for HEPCGN_04840 only; 10 genomes with orthologs for HEPCGN_25875 only