Conservation of cofitness between GFF47 and GFF99 in Sphingobium sp. HT1-2

17 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF47 G:T/U mismatch-specific uracil/thymine DNA-glycosylase (EC 3.2.2.27) 1.0 GFF99 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.65 15
Brevundimonas sp. GW460-12-10-14-LB2 0.49 A4249_RS00905 DNA-deoxyinosine glycosylase 0.25 A4249_RS08425 class I SAM-dependent RNA methyltransferase low > 48
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS14550 DNA glycosylase 0.13 RR42_RS13170 23S rRNA methyltransferase low > 128
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS09845 DNA-deoxyinosine glycosylase 0.14 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 80
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS08960 2-hydroxyacid dehydrogenase 0.15 HSERO_RS14825 23S rRNA methyltransferase low > 78
Ralstonia solanacearum UW163 0.40 UW163_RS15675 DNA-deoxyinosine glycosylase 0.14 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Caulobacter crescentus NA1000 0.40 CCNA_02574 MUG-like uracil-DNA glycosylase family protein 0.25 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein low > 66
Caulobacter crescentus NA1000 Δfur 0.40 CCNA_02574 MUG-like uracil-DNA glycosylase family protein 0.25 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein low > 67
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_3449 G/U mismatch-specific uracil-DNA glycosylase (EC 3.2.2.-) 0.59 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase low > 68
Ralstonia solanacearum PSI07 0.36 RPSI07_RS19335 DNA-deoxyinosine glycosylase 0.14 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 81
Methylophilus sp. DMC18 0.36 GFF307 hypothetical protein 0.15 GFF916 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 43
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS24625 DNA-deoxyinosine glycosylase 0.15 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 153
Ralstonia solanacearum GMI1000 0.35 RS_RS04905 DNA-deoxyinosine glycosylase 0.13 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 80
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS14125 DNA-deoxyinosine glycosylase 0.14 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 76
Acidovorax sp. GW101-3H11 0.32 Ac3H11_1736 G:T/U mismatch-specific uracil/thymine DNA-glycosylase 0.12 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) low > 79
Lysobacter sp. OAE881 0.31 ABIE51_RS08290 DNA-deoxyinosine glycosylase 0.12 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 62
Variovorax sp. SCN45 0.28 GFF6077 G:T/U mismatch-specific uracil/thymine DNA-glycosylase (EC 3.2.2.27) 0.11 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) low > 127
Xanthomonas campestris pv. campestris strain 8004 0.27 Xcc-8004.4589.1 G:T/U mismatch-specific uracil/thymine DNA-glycosylase 0.15 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) low > 74

Not shown: 7 genomes with orthologs for GFF47 only; 62 genomes with orthologs for GFF99 only